Gene Information

Name : Cyast_0939 (Cyast_0939)
Accession : YP_007164560.1
Strain : Cyanobacterium stanieri PCC 7202
Genome accession: NC_019778
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1049983 - 1050705 bp
Length : 723 bp
Strand : -
Note : PFAM: ABC transporter; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: cyh:Cyan8802_0801 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter relate

DNA sequence : 
ATGTTAGAGGTTCAGCAAGTAGCTGTCAACTATCGAGGCATTGTCGCAGTAGAAAATATTAGTTTTTGCCTCACGTCAGG
GCAAATAGTAGGAATTATCGGGCCAAATGGTGCAGGTAAAAGTTCATTGATTAAGTCAATTTTGGGTTTAATTCCTCTGG
CACAAGGAAAAATTACCTATCGCTCTCAAGCCTTATCAAAACAGTTGGATCAAGTTGCCTACATACCCCAGAGGGCGCAG
ATTGATTGGGATTATCCCATTACTGTGGAAAAGGTGGTTATGATGGCAAGGATTCGTCATCGTCCTCTGTTTCGTCCTCC
TTCTCGACAGTCAAAGGAAATCGTTAAAAATGCCCTTGAGAGGGTGGGAATGTGGGATCTGCGCGATCGCCCCATAGGAC
AATTATCTGGCGGACAACAACAGAGGGTATTTTTAGCCCAAGCCCTAGCCCAAGAAGCGGAGTTATTTCTATTTGATGAA
CCTTTTTCAGGGGTTGATAAAAAGACAGAAAGAATGATTTTTAATGTCTTAGATGATTTGAAAAAACAAGGAAAAATTTT
GCTCGTGGTGGGTCATGAGTTGAAGGAAACTTCGAGGGAGTATGATCGTTTTTTGCTCATTAATAAAAAGTTGATTGCTA
ATGGCTCTCGTAGTGAGGTGATTACCCCCGAAAATCTCCAAAAAGCCTATGGAGATAATGTTATTTTGTTGACTAATAGT
TAA

Protein sequence : 
MLEVQQVAVNYRGIVAVENISFCLTSGQIVGIIGPNGAGKSSLIKSILGLIPLAQGKITYRSQALSKQLDQVAYIPQRAQ
IDWDYPITVEKVVMMARIRHRPLFRPPSRQSKEIVKNALERVGMWDLRDRPIGQLSGGQQQRVFLAQALAQEAELFLFDE
PFSGVDKKTERMIFNVLDDLKKQGKILLVVGHELKETSREYDRFLLINKKLIANGSRSEVITPENLQKAYGDNVILLTNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-38 42
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-38 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-38 42
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-38 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-38 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 8e-37 41
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 8e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_0939 YP_007164560.1 ABC transporter BAC0400 Protein 1e-36 45
Cyast_0939 YP_007164560.1 ABC transporter BAC0440 Protein 1e-41 45
Cyast_0939 YP_007164560.1 ABC transporter BAC0350 Protein 1e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_0939 YP_007164560.1 ABC transporter VFG0526 Protein 1e-38 42