Gene Information

Name : Cyast_0789 (Cyast_0789)
Accession : YP_007164410.1
Strain : Cyanobacterium stanieri PCC 7202
Genome accession: NC_019778
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 880723 - 881469 bp
Length : 747 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cyh:Cyan8802_2

DNA sequence :
TTGGATACACAGAAAGAAAGAATTTTAGTTGTTGATGATGAAGCTAGTATTAGACGTATTCTCGAAACTCGTCTATCAAT
GATTGGTTATGATGTGGTGACTGCTGCTGACGGTGAAGATGCGATCGCCACTTTTCACGAAACCCAACCTGACTTGGTGG
TATTAGACGTTATGATGCCCAAATTAGACGGTTATGGAGTCTGTCAAGAGTTACGCAAAGAATCAGACATCCCCATCATC
ATGTTAACTGCTTTAGGAGATGTGGCAGATAGAATCACAGGTTTAGAATTGGGTGCTGATGACTATGTGGTCAAACCTTT
TTCTCCCAAGGAATTAGAGGCAAGAATTCGCTCTGTATTGAGAAGGGTTGACAAGGATGGAGTGGCTGGTATCCCAAGTT
CAGGAGTCATTTCTGTCAATGCTATTCGTATCGATACCAACAAAAGACAAGTCTATAAAGGAGATCAACGGATTCGCCTT
ACAGGCATGGAGTTCAGCCTTTTAGAGCTCTTGGTGAGTAAATCTGGGGAAGCCTTTTCTCGTTCGGAAATTTTACAAGA
AGTATGGGGTTATACTCCTGAGCGTCATGTGGATACTAGGGTGGTTGATGTTCACGTTTCCCGTCTTCGTGCCAAACTAG
AAGAAGATCCCAGCAATCCTGAATTAATTTTGACTGCTAGGGGTACGGGATATTTATTTCAACGTATTTTAGAACCGGGA
GAAAAAAGAGCATCTGCGAGTAATTAA

Protein sequence :
MDTQKERILVVDDEASIRRILETRLSMIGYDVVTAADGEDAIATFHETQPDLVVLDVMMPKLDGYGVCQELRKESDIPII
MLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKDGVAGIPSSGVISVNAIRIDTNKRQVYKGDQRIRL
TGMEFSLLELLVSKSGEAFSRSEILQEVWGYTPERHVDTRVVDVHVSRLRAKLEEDPSNPELILTARGTGYLFQRILEPG
EKRASASN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 2e-42 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 6e-40 47
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-42 46
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-35 44
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 3e-36 44
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-38 44
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 3e-35 42
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator CP000675.2.gene1535. Protein 9e-35 41
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator BAC0638 Protein 5e-25 41
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator CP001485.1.gene721.p Protein 1e-29 41
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 4e-22 41
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator BAC0533 Protein 5e-26 41
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator CP000647.1.gene4257. Protein 5e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-37 44
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator VFG1386 Protein 7e-34 42
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-28 41
Cyast_0789 YP_007164410.1 winged helix family two component transcriptional regulator VFG1389 Protein 8e-30 41