Gene Information

Name : Cyast_1875 (Cyast_1875)
Accession : YP_007165479.1
Strain : Cyanobacterium stanieri PCC 7202
Genome accession: NC_019778
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2095171 - 2096034 bp
Length : 864 bp
Strand : -
Note : PFAM: ABC 3 transport family; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: cyc:PCC7424_2550 ABC-3 protein; PFAM: ABC-3 protein; SPTR: ABC-3 protein

DNA sequence :
ATGGATTTTTTGATTGAGCCTTTACAATACGGTTTTATGCAACGCTCGTTAATTGTGGCGGTGGTGGTGGGTATCATTTG
TGCCGTGGTGGGTACTTATTTGATGGTGCAACGGTTAGCCCTTTTGGGGGATGCCATCAGTCATTCTGTACTACCCGGCT
TGGCGATCGCCTTTATTTTTGACTGGAATATTTTTACAGGGGCATTTATCGCAGGATTATTGAGTACAATTTTAATAAAT
GTGATTAGAAATAACTCTCAAATCAAGGAAGATGCAGCCATGGGCATTGTTTTTTCTGCCTTTTTTGCTTTGGGAATTAC
CCTCATTACCGTTGTCCAAAAAGACAATAAAATTGACCTCAATCACTTTCTTTTTGGCAACATTTTAAGTGTTAGTGTCA
CTGAGGTTCGGGATACCATTGCGATCGCCCTTTTTATCCTCTTTATAGTAATCTTGTTCTACAAAGAATTATTATTTTAC
ACCTTCGACAAACTAGGGGCGCAATCTGTGGGTTTACCCGTATATTGGCTTGATTTTAGCCTAATGATCCTCATTGGCTT
GACCATAGTTGCCAGTTTAAAAGCAGTGGGCGTTATTCTCGTCCTATCTTTGCTCATTACCCCTTCTGCCACCGCCTATT
TATTAGTAACAAGACTCCATCAAGTAATGTTAGTGGGGGTACTCGTGGGAGTAGTTTCTAGTATTAGCGGAATGTATATC
AGTTTTTATTATAATATTCCTTCTGGTCCTGCCATAGTTTTAGTGGCGACTTTTTTATTCTTTTTGTCCTTCTTATTTAG
CCCCTCACAAGGGATATTTACTAACTTGTTTAAACCTAAGTTAAACAACATAGTTAATAATTAA

Protein sequence :
MDFLIEPLQYGFMQRSLIVAVVVGIICAVVGTYLMVQRLALLGDAISHSVLPGLAIAFIFDWNIFTGAFIAGLLSTILIN
VIRNNSQIKEDAAMGIVFSAFFALGITLITVVQKDNKIDLNHFLFGNILSVSVTEVRDTIAIALFILFIVILFYKELLFY
TFDKLGAQSVGLPVYWLDFSLMILIGLTIVASLKAVGVILVLSLLITPSATAYLLVTRLHQVMLVGVLVGVVSSISGMYI
SFYYNIPSGPAIVLVATFLFFLSFLFSPSQGIFTNLFKPKLNNIVNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 7e-34 44
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 5e-34 44
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-33 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-33 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-33 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-33 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-33 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_1875 YP_007165479.1 ABC-3 protein BAC0352 Protein 2e-33 43
Cyast_1875 YP_007165479.1 ABC-3 protein BAC0442 Protein 5e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_1875 YP_007165479.1 ABC-3 protein VFG0528 Protein 2e-33 43