Gene Information

Name : Cyast_1744 (Cyast_1744)
Accession : YP_007165349.1
Strain : Cyanobacterium stanieri PCC 7202
Genome accession: NC_019778
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1924130 - 1924801 bp
Length : 672 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR005829; KEGG: cyt:

DNA sequence :
ATGAGCAAAATTTTAATTGTCGAAGATGAACAAAAATTAACCAAATTTTTGAAACAGGAATTACAGTATGAGGGATACGA
GGTAATTGTGGCAGAGGATGGGGTTACGGGTTTAACCATGGCAAGGGAATCTCACCCAGATTTAATTTTAATTGATTGGA
TGTTACCAGCCCTTTCTGGGTTAGAAGTATGTCGTCGATTGCGTTTAGCAGGGGATAGGGTACCAATTATTTTACTAACT
GCCAAAGATGAAATTAGTGATCGAGTAGCGGGATTAGATGCAGGGGCGGATGACTATATTGTTAAGCCTTTTAGTATAGA
AGATTTGTCAGCAAGGTTAAAGGCAAATCTGCGTCGTGGTAGTGAAGAAGATCCAGATCAATTAAACTTCCTTGATCTTA
GTTTAAATCGTCGCACTCGGGAAATAAAAAGGGGCGATCGCACCATAGAATTAACCGCCACAGAATATGATTTATTAGAA
TACCTCATTTCCCATCCCCGTCAAGTACTTACCCGTGATCAAATTTTGGAGAGGGTATGGGGTTATGACTTTGGGGGAGA
CTCCAACATCATCGAGGTATACGTGCGCTATTTACGGCTAAAACTAGAAGCCAACAAAGAAAAAAGATTGATTCAAACCG
TCAGGGGAGTAGGCTACGTCTTAAAAGAATAA

Protein sequence :
MSKILIVEDEQKLTKFLKQELQYEGYEVIVAEDGVTGLTMARESHPDLILIDWMLPALSGLEVCRRLRLAGDRVPIILLT
AKDEISDRVAGLDAGADDYIVKPFSIEDLSARLKANLRRGSEEDPDQLNFLDLSLNRRTREIKRGDRTIELTATEYDLLE
YLISHPRQVLTRDQILERVWGYDFGGDSNIIEVYVRYLRLKLEANKEKRLIQTVRGVGYVLKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-34 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 8e-47 49
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 5e-48 48
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 2e-43 47
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 1e-40 45
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 7e-30 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-37 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator BAC0083 Protein 5e-39 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-39 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 2e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 2e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 3e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-40 43
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator BAC0197 Protein 6e-37 43
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 9e-36 42
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 7e-38 42
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-58 55
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-41 44
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator VFG1386 Protein 2e-49 43
Cyast_1744 YP_007165349.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-34 42