Gene Information

Name : Cyan10605_1668 (Cyan10605_1668)
Accession : YP_007161817.1
Strain : Cyanobacterium aponinum PCC 10605
Genome accession: NC_019776
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1995342 - 1996205 bp
Length : 864 bp
Strand : +
Note : PFAM: ABC 3 transport family; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: syp:SYNPCC7002_A1733 ABC 3 transport family protein; PFAM: ABC-3; SPTR: ABC 3 transport family protein

DNA sequence :
ATGATTGTGTTTTCTAGTTTAGTCTCATGGTTACTTGAACCCTTACAGCATAGTTTTATGGTGAAGGCTATTTGGGTAAG
TGCCTTTGTGGGGATTGTTTGTGCGGTATTATCTTGTTATATAACCCTCAAAGGGTGGTCATTAATGGGAGATGCGGTTT
CCCATGCAGTTGTGCCGGGGGTAGTCGTAGCCTACGCTTTAAATATTCCTTTTGCCCTTGGTGCGTTTATTTTTGGTTTT
GGTGCAACGGTGGCCATTGGTTATGTGAAATCAAAAACTCGTCTTAAAGAAGATACCGTAATAGGTGTAATTTTTACAGG
ATTTTTTGCCCTCGGCTTAGTTTTAGTTACCAAAATTCCTAGTAACATCGATTTATTTCATATTTTATTTGGTAATGTTT
TGGGTATCTCCCCAGAAGATATTGTTCAAACTCTAATTGCAGGTGGTATTACTTTAGTTGTAATTTTAATACGTCGTAAA
GATTTACTACTTTTTTGTTTTGATCCCAATCATGCTAAGGCTATCGGCTTAAATACCAAAACTATCTACTATACATTGCT
ATCTCTTTTAGCTTTGACTATTGTAACGGCTTTACAAACGGCGGGAATTATTATGGTAGTAGCGATGTTAGTAACCCCGG
GTGCGATCGCATATTTACTTACAGATCGTTTTGATCAAATGTTAATCTTATCAATAGTTAGTAGTGTTCTATCTTGTGTT
TTAGGCACTTATTTAAGTTATCATTTTGATGTTTCTACGGGGGGAAGTATTGTCGTTTTAATGACCATAATTTTCATTTT
AGCGATGATTTTTGCTCCTAAATATGGCATTATCAATCAAAATACCAAAATATATTCTGCTTAA

Protein sequence :
MIVFSSLVSWLLEPLQHSFMVKAIWVSAFVGIVCAVLSCYITLKGWSLMGDAVSHAVVPGVVVAYALNIPFALGAFIFGF
GATVAIGYVKSKTRLKEDTVIGVIFTGFFALGLVLVTKIPSNIDLFHILFGNVLGISPEDIVQTLIAGGITLVVILIRRK
DLLLFCFDPNHAKAIGLNTKTIYYTLLSLLALTIVTALQTAGIIMVVAMLVTPGAIAYLLTDRFDQMLILSIVSSVLSCV
LGTYLSYHFDVSTGGSIVVLMTIIFILAMIFAPKYGIINQNTKIYSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-45 53
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-45 53
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-45 53
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-45 53
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-45 53
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-48 47
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-48 47
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-48 47
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-48 47
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-48 47
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-31 41
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan10605_1668 YP_007161817.1 ABC-3 protein BAC0352 Protein 6e-46 53
Cyan10605_1668 YP_007161817.1 ABC-3 protein BAC0442 Protein 6e-54 52
Cyan10605_1668 YP_007161817.1 ABC-3 protein BAC0441 Protein 7e-45 51
Cyan10605_1668 YP_007161817.1 ABC-3 protein BAC0351 Protein 1e-48 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan10605_1668 YP_007161817.1 ABC-3 protein VFG0528 Protein 6e-46 53
Cyan10605_1668 YP_007161817.1 ABC-3 protein VFG0527 Protein 1e-48 47