Gene Information

Name : Cylst_3561 (Cylst_3561)
Accession : YP_007148378.1
Strain : Cylindrospermum stagnale PCC 7417
Genome accession: NC_019757
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4063943 - 4064695 bp
Length : 753 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGTATACCAGTGACTTGACCAAGTACTCGACCAGAGCGGAGATCGGACAAACGAGCCGAATTCTCGTAGTAGAAGATGA
AGAACTCATCCGGGAAATGCTAGTTGTGGCATTGGAGGAGGAAGGCTATGAGGTGATTACTGCCGCTGATGGGCGCTCGG
CGATAGAATTTCTCAAAAGTTGTGAACCCAATTCAGGTGAGTTGCCCTTTGATTTGGTGCTTCTGGATTTGATGCTGCCG
CAGATTAATGGGCTAGATATTTGCCGCTTGTTGCGTCATCAAGGAAACCCAGTGCCGGTTTTGATGCTCAGTGCAAAGGG
TAGCGAAACTGACCGAGTTCTGGGTTTGGAGGTAGGAGCAGATGATTATTTAACTAAACCCTTTAGTATGCGGGAATTGG
TGGCTCGGTGTCGCGCATTACTCCGCCGCCAACGTTTAAGTAGTTTGCCACAATTGCCTGTATTAAAACATAAGGATGTG
ACCTTAAATCCCCAAGAGTGCCGTGTGTTGGTTCGTGGTCAAGAGGTAAGTTTATCACCGAAGGAGTTCCGACTGCTGGA
ACTGTTTATGAGTTATGCCCGTCGGGTATGGTCGCGGGAGCAGTTGCTGGATCAGGTTTGGGGTCCAGATTTTGTTGGGG
ATAGCAAAACTGTGGATGTTCACATTCGCTGGTTGCGCGAAAAGTTAGAGGCAGATCCCAGTCATCCAGAATATATTGTG
ACTGTACGAGGTTTTGGCTATCGATTCGGATAA

Protein sequence :
MYTSDLTKYSTRAEIGQTSRILVVEDEELIREMLVVALEEEGYEVITAADGRSAIEFLKSCEPNSGELPFDLVLLDLMLP
QINGLDICRLLRHQGNPVPVLMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRALLRRQRLSSLPQLPVLKHKDV
TLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWSREQLLDQVWGPDFVGDSKTVDVHIRWLREKLEADPSHPEYIV
TVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-25 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 9e-30 45
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 1e-29 44
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 1e-36 44
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 1e-29 44
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-30 43
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 3e-28 42
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3834. Protein 3e-14 41
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene4273. Protein 3e-14 41
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.915041.p Protein 3e-14 41
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 1e-33 41
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 1e-29 43
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 3e-25 42
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 3e-25 42
Cylst_3561 YP_007148378.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 2e-19 41