Gene Information

Name : Cylst_2256 (Cylst_2256)
Accession : YP_007147166.1
Strain : Cylindrospermum stagnale PCC 7417
Genome accession: NC_019757
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+/Zn2+ transport system, permease component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2645477 - 2646322 bp
Length : 846 bp
Strand : +
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGCTCCAAGCACTAATTGAGCCGCTGCAATATGGCTTTATGCAGCGTTCCCTCGTAATTGCGATTTTAGTTGGTTTGCT
GTGTGCAGTCGTTGGTAGTTACTTGATGGTGCAACGACTAGCCTTACTGGGTGATGCTATCAGCCATTCAGTTTTACCCG
GATTAGCGATCGCCTTTATGGTGGGAAGCAATATCTATGTAGGGGCATTTATTGCCGGAGTCTTGAGTACAATGGCGATC
GCCGTGATCAGGACGCGATCGCCAATTAAAGAAGACGCAGCAATGGGTATAGTTTTTTCAGCATTTTTTGCTTTAGGAAT
TACCCTAATCACCGTCATTCAAAAAGATAACAAAATAGACCTAAATCACTTCCTTTTCGGTAACATTCTCGGCGTCACCG
CTGACGAAGTGCGGGACACCGCGATCATTGCCACTATCGTTTTAATAGTCGTTGTTTTAATCTACAAAGAACTTTTATTT
TACACCTTTGACCCCTTAGGTGCTCAAGCCGCCGGGTTGCCAGTAAATCGGCTAAATTTTGGACTCATGTTACTAATTGC
TTTAACAATTGTTGCCAGCATGAAAGCTGTAGGTGTGATTCTCGTACTATCACTTTTGATTACACCAGGAGCCACTGCCT
ATCTATTAGTTAAACGCTTACATGAATTGATGATTTTAGGCGCGGTAATTGGCGTATTTTCCAGCATCAGCGGTATGTAT
CTCAGCTATTTTTATAATTTGCCTTCTGGTCCAGCGATTGTTTTAGTAGTGTCAGGATTATTTTTGTTGTCATTACTATT
TAGTCCTAGACACGGAATTTTGATACCGAGTGTTAATAAAAAGTAG

Protein sequence : 
MLQALIEPLQYGFMQRSLVIAILVGLLCAVVGSYLMVQRLALLGDAISHSVLPGLAIAFMVGSNIYVGAFIAGVLSTMAI
AVIRTRSPIKEDAAMGIVFSAFFALGITLITVIQKDNKIDLNHFLFGNILGVTADEVRDTAIIATIVLIVVVLIYKELLF
YTFDPLGAQAAGLPVNRLNFGLMLLIALTIVASMKAVGVILVLSLLITPGATAYLLVKRLHELMILGAVIGVFSSISGMY
LSYFYNLPSGPAIVLVVSGLFLLSLLFSPRHGILIPSVNKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-43 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-43 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-44 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-44 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-44 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-44 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-44 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_2256 YP_007147166.1 ABC-type Mn2+/Zn2+ transport system, permease component BAC0442 Protein 6e-46 43
Cylst_2256 YP_007147166.1 ABC-type Mn2+/Zn2+ transport system, permease component BAC0352 Protein 9e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_2256 YP_007147166.1 ABC-type Mn2+/Zn2+ transport system, permease component VFG0528 Protein 8e-45 41