Gene Information

Name : Cylst_1450 (Cylst_1450)
Accession : YP_007146414.1
Strain : Cylindrospermum stagnale PCC 7417
Genome accession: NC_019757
Putative virulence/resistance : Virulence
Product : ATPase with chaperone activity, ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1660179 - 1662632 bp
Length : 2454 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA)

DNA sequence :
ATGTTTGAACACTTCACTTCCGAAGCCATTAGAGTAATTATGCTAGCCCAGGAGGAAGCACGCCGACTGGGACACAATTT
TGTAGGAACGGAACAAATTCTCCTAGGGTTGATGGGAGAAGGAACAGGGGTTGCTGCTAAGGTGCTGACCGAGTTGGGCG
TTACCCTCAAAGATGCACGTCGCGAAGTAGAAAAAATTATTGGTCGAGGATCTGGCTTTGTCCCGCCAGAAATTCCCTTT
ACTCCCAAGGTTAAAAGCTTGTTCGAGCAATCGTTTAGAGAAGCTCATAGCCTTGGACACAACTACATAAACACGGAACA
CTTATTATTGGGGTTAACTGAAGCGGGCGAGGGAGTCGCCGCTAAAGTACTGCAAAATCTGGGGGTTGACCTAAAGGCTG
TCCGCACTGCGGTAATGCGTCGTTTGGGTGATGATGCCTCTGTATTCGTTGGTGGTAATAGTCAAAAGCGTAACCAAAAA
CTAACTATAGAGGAGTTTGGCAGAAATCTCACCAAACTAGCACAAGAAGGCAAACTCGACCCCGTAGTTGGTCGTGGAAA
GGAAATTGAGCGTACCATTCAAATTCTGGGTCGACGGACTAAGAATAACCCAGTGTTGATTGGGGAACCGGGAGTTGGTA
AAACAGCGATCGCAGAAGGTATCGCTCAACGTATTGTTAACCAAGATGCTCCAGAGATTTTGCTCAACAAGCAAGTTATT
AGTCTGGATATGGGATCTCTGGTATCTGGGACTCGCTTTCGCGGCGACTTTGAAGAACGCCTAAAGAAAATCATGGATGA
AATTCGCTCTGTGGGCAATATCATCCTGGTAATTGACGAAGTACATACCTTAGTTGGCGCTGGTGGTACAGAAGGCGGTT
TGGATGCAGCTAACATCCTCAAGCCAGCCTTAGCACGGGGTGAACTCCAGTGCATTGGTGCTACCACCCTCAAGGAATAT
CGTCAGCACATTGAGCGCGATGCTGCTTTAGAGCGGCGTTTCCAACCGATTTTGGTAGGTGAACCCTCGATTGAGGAAAC
TGTCCAAATTCTCTACGGCTTACGCAGTGCTTATGAACAGCACCACAAAGTGCATATTTCTGATGCGGCAATTTTGGCAG
CAGCAGAGTTGTCAGAGCGTTATATTAGCGATCGCTTTTTGCCAGATAAAGCCATCGACTTAATTGACGAAGCTGGCTCT
CGTGTGCATTTGCGAAACTCTCGCTCTTCCACCAATAAAGAACTCAAGCGCGAACTAATCAGCGTTACCAAATCCAAAGA
GGACGCCATTAGAGTCCAAGACTTTGGCAAAGCTGTCAAGTTACGCGGCCAAGAATTGGAACTGCAAACACAACTGCACG
CCGAATCAGAAACCGATAAAACTGTTACGATCCCCATCGTTGGCGAAGAAGACATCGCCCAAATTGTCGCTTCTTGGACA
GGAGTACCAGTTAACAAACTGACGGAATCTGAATCAGAGTTGCTATTACACCTAGAAGACACGCTTCACCAACGCCTCAT
CGGTCAAGAACAAGCAGTTACATCTGTTTCTCGCGCCATTCGTCGCGCACGTGTCGGGCTAAAAAATCCCAATCGCCCAA
TTGCTAGCTTTATCTTCTCTGGCCCCACCGGAGTTGGTAAAACTGAATTGGCGAAGGCATTAGCTGCATATTTCTTCGGT
TCCGAAGAAGCGATGATTCGCCTAGATATGTCGGAATTCATGGAAAGCCACACCGTTTCCAAGCTGATTGGTTCTCCACC
TGGTTACGTTGGCTACGACGATGGCGGGCAACTAACAGAAGCTGTGCGGCGCAAACCATACTCAGTGCTGCTATTCGACG
AAATCGAAAAAGCGCACCCCGATGTATTCAATATGTTGCTGCAAATCTTGGATGATGGTCAACTCACCGACGCCAAAGGT
CGGAAAGTGGACTTCAAGAACACGCTGATCATTTTGACATCTAACATCGGTTCTAAGGTGATTGAAAAAGGCGGTAGTGG
TTTAGGCTTTGAGTTCGCCGACAATCAATCAGAAGCTAGTTACAACCGCATTCGCACCTTAGTCAATGAGGAATTGAAAG
CTTACTTCCGTCCTGAGTTCCTGAATCGTTTAGATGAGATTATCGTCTTTACTCAGTTGGGTAAGGATGAAGTCAAGCAA
ATTGCTGAAATTATGCTGCTCGATGTGGCTGGCCGCTTGACTGAAAGGGGAATTAAACTAGAAGTTAGCGATCGCTTCAA
AGAGCGTGTAGTACAAGAAGGCTACAACCCCAGCTACGGCGCTAGGCCGTTACGTCGGGCAATTATGCGCCTGTTAGAAG
ATTCTCTCGCCGAAGCACTACTGTCTGGTCAAATCGCCGATGGAGACACCGCCATTGTCGATATTGATGATGACGGACAG
GTAAGAGTAACCAAGCCAGAAACACGCGAGTTTTTATTAGCAAGTGTTGGCTAA

Protein sequence :
MFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLTELGVTLKDARREVEKIIGRGSGFVPPEIPF
TPKVKSLFEQSFREAHSLGHNYINTEHLLLGLTEAGEGVAAKVLQNLGVDLKAVRTAVMRRLGDDASVFVGGNSQKRNQK
LTIEEFGRNLTKLAQEGKLDPVVGRGKEIERTIQILGRRTKNNPVLIGEPGVGKTAIAEGIAQRIVNQDAPEILLNKQVI
SLDMGSLVSGTRFRGDFEERLKKIMDEIRSVGNIILVIDEVHTLVGAGGTEGGLDAANILKPALARGELQCIGATTLKEY
RQHIERDAALERRFQPILVGEPSIEETVQILYGLRSAYEQHHKVHISDAAILAAAELSERYISDRFLPDKAIDLIDEAGS
RVHLRNSRSSTNKELKRELISVTKSKEDAIRVQDFGKAVKLRGQELELQTQLHAESETDKTVTIPIVGEEDIAQIVASWT
GVPVNKLTESESELLLHLEDTLHQRLIGQEQAVTSVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELAKALAAYFFG
SEEAMIRLDMSEFMESHTVSKLIGSPPGYVGYDDGGQLTEAVRRKPYSVLLFDEIEKAHPDVFNMLLQILDDGQLTDAKG
RKVDFKNTLIILTSNIGSKVIEKGGSGLGFEFADNQSEASYNRIRTLVNEELKAYFRPEFLNRLDEIIVFTQLGKDEVKQ
IAEIMLLDVAGRLTERGIKLEVSDRFKERVVQEGYNPSYGARPLRRAIMRLLEDSLAEALLSGQIADGDTAIVDIDDDGQ
VRVTKPETREFLLASVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_1450 YP_007146414.1 ATPase with chaperone activity, ATP-binding subunit VFG0079 Protein 0.0 56
Cylst_1450 YP_007146414.1 ATPase with chaperone activity, ATP-binding subunit VFG0080 Protein 5e-155 55