Gene Information

Name : Cylst_1038 (Cylst_1038)
Accession : YP_007146036.1
Strain : Cylindrospermum stagnale PCC 7417
Genome accession: NC_019757
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1198199 - 1198900 bp
Length : 702 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGAGAATTTTATTAGTTGACGATGAAGTTGAACTAACTGACCCCTTGAGCCGTGTGTTAACTCGTGAAGGTTATAGCGT
GGATGCTGCTTATGATGGCACAAGTGGCAGCAACCTGGCACAAGCAGGCAGTTATGATCTACTGATTTTAGATTGGATGC
TACCAGGAAAAACGGGGTTGGAGATTTGTCAGGAATTGCGACGTCAAGGTAAAACCACTCCTGTGCTGTTTCTCACGGCC
AAAGATACTTTAGATGACCGTGTAGAAGGTTTAGATGCTGGTGCAGACGACTATTTGGTAAAACCGTTTGAACTGCGGGA
GTTGCTAGCACGAGTCCGCGCTTTGTTGCGTCGTTCTGGTGTGGAATCGTCGTACACCACCACAACAGGACGGCTGATGG
TAGCTGATTTAGAACTCGATGGCGAAAACCAAATAGCCTATCGCCAAGGACGAATTATTGAGCTATCTCAAAAAGAAAGC
CAGTTGCTGCAATACTTTATGGAACACACCGGACAACTGTTAACTCACGCCCAGATTCTGCAACATCTGTGGCAAAATAA
CGAGCAACCCAGTAGCAATGTGATCGCGGCATTAATTCGCTTGCTGCGGCGTAAGATTGAGGTAGGTAGTGAAACTCCAC
TGATTCACACTGTTTACGGTAAAGGCTATCGCTTCGGCGCAGCTTCAGTGGAGTTAGTTTAG

Protein sequence :
MRILLVDDEVELTDPLSRVLTREGYSVDAAYDGTSGSNLAQAGSYDLLILDWMLPGKTGLEICQELRRQGKTTPVLFLTA
KDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRSGVESSYTTTTGRLMVADLELDGENQIAYRQGRIIELSQKES
QLLQYFMEHTGQLLTHAQILQHLWQNNEQPSSNVIAALIRLLRRKIEVGSETPLIHTVYGKGYRFGAASVELV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 3e-29 46
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-30 46
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0288 Protein 3e-33 44
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 4e-28 44
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 4e-27 44
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 1e-25 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 4e-30 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 8e-26 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene3215. Protein 5e-17 42
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-30 41
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 2e-31 44
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 3e-28 41
Cylst_1038 YP_007146036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 6e-30 41