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Name : Cri9333_0635 (Cri9333_0635) Accession : YP_007141088.1 Strain : Crinalium epipsammum PCC 9333 Genome accession: NC_019753 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : - COG ID : - EC number : - Position : 723555 - 725438 bp Length : 1884 bp Strand : + Note : PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cyn:Cyan7425_4149 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein DNA sequence : ATGAAAGTAAATGCTGCCTCATTAAAATTATCTAAGTCTAAACAAAAAGAGCTAGAAAGTTTATTGGTTGGTTATTGGGC GCAAGATACCTGGAAATTTGGTGAATGTTCTGTCCAAGACGGATACAAAGATTACTCTTATGATAGAGCAATTAAATTCA CCTGCTCCTCCTCCACTTTGAACAGTGAATTAAAATATGGTTGCTGGCAAAAATTAGAACGAGGTGATTGGAAAACTAAG ACACTATGGGGGAAAGTAGGAAATATTAGAGATATTTGCAACTGGATAAACCAATCATCAATGAACATTGGATCTTTTTT AGAAAGAGATTTAGCTACTCTAGAAATTTCTTTTCGTTCATATTTAGTTGAAATTGGCAACTTTAGATTTTACAAAGGTA TTAATTTAGATAAGGAGCAAAAAATTCGTGAATATGTAAACGATGGTGATCAAATACACACTTTACGCCAAGTGTACAAA GTAATTCAAGAATTTTCTGATGACAGAGATGAGTATGATAGGGATATTTGGGATATAAGAAAATTAGGTTATTCATCTAA TCCTTCTCAACCAATTCACAAATTAAATTTTTCTAAAATCGTTCAACCTTGGATAAAATCAGCGGCGAAAAAATTTATTA AGTATAGCTTATCAACCCACTCAGTTGGCGAAGCTCAAACTAGATTATCGAAAGTGGGCAATTTTTCGATTTTTTTAGCA TATTATTATCCAGATTTAGAACCATCAGAAATCAATCGAGAATTAATTCTTAAATATCTAAGTCAACTATCGAAAACGGG TTTATCAAGTGTGAATATACGTAGGCATATAGGTTGCTTGAACACATTTTTAGAACTATGCGCTAGAGAAGGTTGGGCAG ATGTGCCAGATCAAAGGCTTATCTACAATGAAGATTATCCACGTTTAAGCCAAAACAAACCTCGCTTTATACCAGAAAAT GTATTAAGTCAACTTAATGAACATTTGGATAAATTACCGCCTCATATTATGCGGATGGTAATGATTATTCAGGAATGTGG AATGCGAATTAGTGAGCTTTGTTGCTTACAATTTAACTGTCTTAGCCAAGATGTTCACGGTGATTGGTTTTTACTCTATT ATCAATTCAAAATGAAAAAGGAACATATTATTCCAATTTCAAAAGAAATAGTAGCTGTTATTCAAGAGCAACAGGAATAC GTCAGGCAAGAGAGAGGTCAGGATTGTAAATATTTATTTTTTTCTCCCAGAGCGAATCGTGGAGATAAACCTATTAAACA AGCTCAGTTCACTAATGCACTTAATCAAGTAGCTTACGAACAACAAATTAGGGATAGTTCTGGAAACTTGTGGCGTTTTC AAGCACATCAATTTCGTCACACAGTCGGTACACGCATGATTAATATGGGCGTTCCACAGCACATCATTCAGCGTTATTTA GGTCATGAATCTCCAGAAATGACTAATCATTACGCTCACATTCACGACCAAACCCTTAAAGAGGAGTTCGCCAAATTCAA AAACAAGATTGTTGATATTGCAGGAAAAGTAGTTGAACAAGAAAACTCCATAAGCCAAAATCCTGAAGTGCAATGGATTA AGAAAAATATTTTGGCTCAATCACTACCTAATGGTTCATGCGCCTTACCTGTCGTAGCTGGTCAATGTCCACACGCCAAT GCTTGCCTTAGCTGTACTCATTTCCGCACTACCTCCGAGTTTCTAGATGAACATAAGAAACAGTTAAAGCAGACTAACAA AATTATTGAGACAGCTAAAGCTAATAGCTGGCAGCGTCAAGTCGAGATGAACGAGAAGGTTAAACAAAGTTTAGAAAATA TTATTAACTCATTAGAAGGGGACTCTAATGAAACACCAACGTAA Protein sequence : MKVNAASLKLSKSKQKELESLLVGYWAQDTWKFGECSVQDGYKDYSYDRAIKFTCSSSTLNSELKYGCWQKLERGDWKTK TLWGKVGNIRDICNWINQSSMNIGSFLERDLATLEISFRSYLVEIGNFRFYKGINLDKEQKIREYVNDGDQIHTLRQVYK VIQEFSDDRDEYDRDIWDIRKLGYSSNPSQPIHKLNFSKIVQPWIKSAAKKFIKYSLSTHSVGEAQTRLSKVGNFSIFLA YYYPDLEPSEINRELILKYLSQLSKTGLSSVNIRRHIGCLNTFLELCAREGWADVPDQRLIYNEDYPRLSQNKPRFIPEN VLSQLNEHLDKLPPHIMRMVMIIQECGMRISELCCLQFNCLSQDVHGDWFLLYYQFKMKKEHIIPISKEIVAVIQEQQEY VRQERGQDCKYLFFSPRANRGDKPIKQAQFTNALNQVAYEQQIRDSSGNLWRFQAHQFRHTVGTRMINMGVPQHIIQRYL GHESPEMTNHYAHIHDQTLKEEFAKFKNKIVDIAGKVVEQENSISQNPEVQWIKKNILAQSLPNGSCALPVVAGQCPHAN ACLSCTHFRTTSEFLDEHKKQLKQTNKIIETAKANSWQRQVEMNEKVKQSLENIINSLEGDSNETPT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpB | BAB47666.1 | transposase B(Tn554) | Not tested | Type-III SCCmec | Protein | 1e-102 | 42 |
| tnpB | BAC53828.1 | transposase B(Tn554) | Not tested | SRImec-III and SCCmec-III region | Protein | 1e-102 | 42 |
| tnpB | BAA82202.1 | transposaseB | Not tested | Type-II SCCmec | Protein | 1e-102 | 42 |
| tnpB1 | YP_039525.1 | transposase B 1 | Not tested | Type-II SCCmec | Protein | 1e-102 | 42 |
| tnpB | BAC57471.1 | transposase B | Not tested | Type-IIIinv SCCmec | Protein | 9e-103 | 42 |
| tnpB | NP_370579.1 | transposase B | Not tested | Type-II SCCmec | Protein | 1e-102 | 42 |
| tnpB | NP_373291.1 | transposase B for Tn554 | Not tested | Type-II SCCmec | Protein | 1e-102 | 42 |
| tnpB-3 | YP_190049.1 | transposase B | Not tested | Type-II SCCmec | Protein | 1e-102 | 42 |
| tnpB | BAC57490.1 | transposaseB | Not tested | Type-IIIinv SCCmec | Protein | 3e-100 | 42 |
| unnamed | BAB47606.1 | transposase B of Transposon Tn554 | Not tested | Type-III SCCmec | Protein | 2e-100 | 42 |
