Gene Information

Name : Cri9333_0634 (Cri9333_0634)
Accession : YP_007141087.1
Strain : Crinalium epipsammum PCC 9333
Genome accession: NC_019753
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 722468 - 723550 bp
Length : 1083 bp
Strand : +
Note : PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: cyn:Cyan7425_4150 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-t

DNA sequence :
GTGAAAGTTCAACGGGTTCGCATCCCTAACAGCGACAGAATAACCTGGACAGTGCTGGACGATAATTACTTCCCTATCCG
TCCGATTGAACAGTTTATTAGCTACTTAGAAAGCATTGAGCGAAGTCCTAATACAGTTAGGTCTTACGTCCACCATCTCA
AGCTGTATTGGGAATACCTTGCAGATACAAGCAGAGATTGGACGCAGGTAGGGCTATCAGAACTGGCTGATTTTGTCGCA
TGGCTAAGAAATCCTCAACCTGGAACTACTTCCATGCAAGAGCAAGAATCAAAACGTACTGAGGCGACTGTAAATGCTGT
AATTACCTCAGTCTGTATGCTCTACGATTTTCAAGAACGTCTGGGCGTTGTAGAAAATATTCCACTCTACAGAACGACTA
TGCAGCCAGGAAGACGTTACAAAAGCTTTTTGCACCATATCAACAAAAGCAAGCCAGTTAGAACAAAGCTAATTAAGCTC
AAAGAACCGAAACGGATTCCGAAAACTTTAGCGACTGAGCAAGTCAAGCAATTAATTGATGTCTGCGAAAGGATCAGGGA
TAAATTTTTAATTGCGCTGCTCTACGAAAGTGGAATACGCATCGGGCAAGCTCTGGGATTAAGACATGAAGATATTCGCT
CTTGGGATAATCTAATTTGCATAGTTCCTAGAGAAAATAATGCTAATGGAGCTAGGGCAAAAACTAGAAATACCAATAAC
ATCCATGTTTCTCAGGAATTAATGGGTTTATATACTGAGTATTTACTCAAAGAATTTGATGACATTGACAGTGATTATGT
CTTTGTAAACTTATGGGATGGAGTTATAGGAAGACCCATGAAATATGGGGCAGTAGCAGATTTATTTGAAAGGTTAAGCA
AGAAAACTGGTATTCACGCACGTCCTCATATGCTGCGACATACCCATGCAACAGAACTAATTCGTAGTGGATGGGATGCG
GCTCATGTACAAAAAAGGTTGGGACACGCACAAGTGCAAACAGTCCTTAATACCTACACTCATCTTACTAATGAAGACAT
GAAAACAGCTTATCAAGATTACTTAAACAAGAGAGATAAATAG

Protein sequence :
MKVQRVRIPNSDRITWTVLDDNYFPIRPIEQFISYLESIERSPNTVRSYVHHLKLYWEYLADTSRDWTQVGLSELADFVA
WLRNPQPGTTSMQEQESKRTEATVNAVITSVCMLYDFQERLGVVENIPLYRTTMQPGRRYKSFLHHINKSKPVRTKLIKL
KEPKRIPKTLATEQVKQLIDVCERIRDKFLIALLYESGIRIGQALGLRHEDIRSWDNLICIVPRENNANGARAKTRNTNN
IHVSQELMGLYTEYLLKEFDDIDSDYVFVNLWDGVIGRPMKYGAVADLFERLSKKTGIHARPHMLRHTHATELIRSGWDA
AHVQKRLGHAQVQTVLNTYTHLTNEDMKTAYQDYLNKRDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA NP_370580.1 transposase A Not tested Type-II SCCmec Protein 2e-81 45
tnpA NP_373292.1 transposase A for Tn554 Not tested Type-II SCCmec Protein 2e-81 45
tnpA-3 YP_190048.1 transposase A Not tested Type-II SCCmec Protein 2e-81 45
tnpA BAB47667.1 transposase A(Tn554) Not tested Type-III SCCmec Protein 2e-81 45
tnpA BAC53829.1 transposase A(Tn554) Not tested SRImec-III and SCCmec-III region Protein 2e-81 45
tnpA BAC57491.1 transposaseA Not tested Type-IIIinv SCCmec Protein 2e-81 45
unnamed BAA82201.1 transposaseA Not tested Type-II SCCmec Protein 2e-81 45
tnpA1 YP_039526.1 transposase A 1 Not tested Type-II SCCmec Protein 2e-81 45