|
Name : Cri9333_0634 (Cri9333_0634) Accession : YP_007141087.1 Strain : Crinalium epipsammum PCC 9333 Genome accession: NC_019753 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : - COG ID : - EC number : - Position : 722468 - 723550 bp Length : 1083 bp Strand : + Note : PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: cyn:Cyan7425_4150 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-t DNA sequence : GTGAAAGTTCAACGGGTTCGCATCCCTAACAGCGACAGAATAACCTGGACAGTGCTGGACGATAATTACTTCCCTATCCG TCCGATTGAACAGTTTATTAGCTACTTAGAAAGCATTGAGCGAAGTCCTAATACAGTTAGGTCTTACGTCCACCATCTCA AGCTGTATTGGGAATACCTTGCAGATACAAGCAGAGATTGGACGCAGGTAGGGCTATCAGAACTGGCTGATTTTGTCGCA TGGCTAAGAAATCCTCAACCTGGAACTACTTCCATGCAAGAGCAAGAATCAAAACGTACTGAGGCGACTGTAAATGCTGT AATTACCTCAGTCTGTATGCTCTACGATTTTCAAGAACGTCTGGGCGTTGTAGAAAATATTCCACTCTACAGAACGACTA TGCAGCCAGGAAGACGTTACAAAAGCTTTTTGCACCATATCAACAAAAGCAAGCCAGTTAGAACAAAGCTAATTAAGCTC AAAGAACCGAAACGGATTCCGAAAACTTTAGCGACTGAGCAAGTCAAGCAATTAATTGATGTCTGCGAAAGGATCAGGGA TAAATTTTTAATTGCGCTGCTCTACGAAAGTGGAATACGCATCGGGCAAGCTCTGGGATTAAGACATGAAGATATTCGCT CTTGGGATAATCTAATTTGCATAGTTCCTAGAGAAAATAATGCTAATGGAGCTAGGGCAAAAACTAGAAATACCAATAAC ATCCATGTTTCTCAGGAATTAATGGGTTTATATACTGAGTATTTACTCAAAGAATTTGATGACATTGACAGTGATTATGT CTTTGTAAACTTATGGGATGGAGTTATAGGAAGACCCATGAAATATGGGGCAGTAGCAGATTTATTTGAAAGGTTAAGCA AGAAAACTGGTATTCACGCACGTCCTCATATGCTGCGACATACCCATGCAACAGAACTAATTCGTAGTGGATGGGATGCG GCTCATGTACAAAAAAGGTTGGGACACGCACAAGTGCAAACAGTCCTTAATACCTACACTCATCTTACTAATGAAGACAT GAAAACAGCTTATCAAGATTACTTAAACAAGAGAGATAAATAG Protein sequence : MKVQRVRIPNSDRITWTVLDDNYFPIRPIEQFISYLESIERSPNTVRSYVHHLKLYWEYLADTSRDWTQVGLSELADFVA WLRNPQPGTTSMQEQESKRTEATVNAVITSVCMLYDFQERLGVVENIPLYRTTMQPGRRYKSFLHHINKSKPVRTKLIKL KEPKRIPKTLATEQVKQLIDVCERIRDKFLIALLYESGIRIGQALGLRHEDIRSWDNLICIVPRENNANGARAKTRNTNN IHVSQELMGLYTEYLLKEFDDIDSDYVFVNLWDGVIGRPMKYGAVADLFERLSKKTGIHARPHMLRHTHATELIRSGWDA AHVQKRLGHAQVQTVLNTYTHLTNEDMKTAYQDYLNKRDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpA1 | YP_039526.1 | transposase A 1 | Not tested | Type-II SCCmec | Protein | 2e-81 | 45 |
| tnpA | NP_370580.1 | transposase A | Not tested | Type-II SCCmec | Protein | 2e-81 | 45 |
| tnpA | NP_373292.1 | transposase A for Tn554 | Not tested | Type-II SCCmec | Protein | 2e-81 | 45 |
| tnpA-3 | YP_190048.1 | transposase A | Not tested | Type-II SCCmec | Protein | 2e-81 | 45 |
| tnpA | BAB47667.1 | transposase A(Tn554) | Not tested | Type-III SCCmec | Protein | 2e-81 | 45 |
| tnpA | BAC53829.1 | transposase A(Tn554) | Not tested | SRImec-III and SCCmec-III region | Protein | 2e-81 | 45 |
| tnpA | BAC57491.1 | transposaseA | Not tested | Type-IIIinv SCCmec | Protein | 2e-81 | 45 |
| unnamed | BAA82201.1 | transposaseA | Not tested | Type-II SCCmec | Protein | 2e-81 | 45 |
