Gene Information

Name : Cri9333_4577 (Cri9333_4577)
Accession : YP_007144867.1
Strain : Crinalium epipsammum PCC 9333
Genome accession: NC_019753
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5158049 - 5158726 bp
Length : 678 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: ava:Ava_3453 t

DNA sequence : 
ATGAATATTTTGTACGTTGAAGACGAAGCAAAGATTGCTCACTTTGTCCACACTGGACTGAAGGAACATGGATTTATTGT
TGATTACTGTGGCGATGGTTTAGATGGCTATAACCGCGCTATAGACAATGACTATGATGCAATTGTTCTGGATATCATGT
TGCCTGGAAAAGATGGGTTATCTATCCTGAAGAGCCTGCGACAGGCAAGGCGTAATGTACCAGTGATTTTGCTAACTGCT
CGTAATGAATTGGACGATCGCTTAGAAGGTTTAAACTTGGGGGCAGACGATTACATCGCCAAGCCGTTTTTTGTTGAAGA
GTTAGTTGCCCGTATTCATGCTGTGGTGCGTCGGACTTCCGGCGAACACCAAAATATACTTAGTGTGGGACCAATCAAAC
TAGACTGCATCACACGAGAAGTAACTTGCAATCAGCAAGCTGTAGAACTTACCAGCCGTGAGTTCAATCTAATGGAATAT
TTGATGCGATCGCTCGGACGAGTTTTTACCCGCACCCAAATATTAGAACACGTCTGGGGCTACGATTTCAATCCTAATAC
TAATGTGGTTGATGTCTGTATTCAAAGGATTCGCAAGAAGCTAGAACCTATCGGAGGTGCAAGTTGGATTGAAAGTGTGC
GCGGCGTGGGATATCGTTTTCGCAAACCAGAGTCTTAA

Protein sequence : 
MNILYVEDEAKIAHFVHTGLKEHGFIVDYCGDGLDGYNRAIDNDYDAIVLDIMLPGKDGLSILKSLRQARRNVPVILLTA
RNELDDRLEGLNLGADDYIAKPFFVEELVARIHAVVRRTSGEHQNILSVGPIKLDCITREVTCNQQAVELTSREFNLMEY
LMRSLGRVFTRTQILEHVWGYDFNPNTNVVDVCIQRIRKKLEPIGGASWIESVRGVGYRFRKPES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-37 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 5e-35 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 1e-37 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-44 45
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator BAC0125 Protein 5e-43 44
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-45 41
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 2e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-38 46
Cri9333_4577 YP_007144867.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-37 42