|
Name : Cri9333_4240 (Cri9333_4240) Accession : YP_007144539.1 Strain : Crinalium epipsammum PCC 9333 Genome accession: NC_019753 Putative virulence/resistance : Virulence Product : type II secretion system protein E (GspE) Function : - COG functional category : - COG ID : - EC number : - Position : 4783991 - 4785679 bp Length : 1689 bp Strand : - Note : PFAM: Type II/IV secretion system protein; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593:IPR001482; KEGG: gvi:gll0921 general secretion pathway protein E; PFAM: Type II secretion system prot DNA sequence : ATGCAAACTCCCTCACAGAATATTACCTCTGCTTGGCGGAAGTTAAGAAATCATGAGATTACTTGCGAACAAGCCTTAAA AACTTTGGTAGACGAGCAGGGTAATGTAGCCTTAAAACTACTTGACAGGGAAGTTACTTACCGCTTTTTTAAGCACTTTC CAGACAAAAATATTTTACCACCGTTGATTCCTCTACTGCTTTGGCGTGGCTCCTACTATCTTGGAAGCCCTACTGCGGTT GAATTAGAGTTGATTAGGGAACTGAGCGATCGCACCTTAACTGAGATCAAAATTATTCCCGTTAGTAAAAAAAGTTATAG TACCTGGCAAAACATCCAAAAAATTGATTCCAAACTGCAAAGCAGTTCTCAATCAATCAATTCTATCAGCCGTGAGCAAG AACAAGAAGATATCAGCGAAGTTACAGAAGTATTCCTTTCTCAATCTGTTGATCAAATTGCTCGCATTAAAACCCTAATT GCAGCAGCATTGCGTAACCGTGCTTCAGATGTCCACTTAGAGCCAATGACAGAAGGATTAAGAGTCCGCTATCGCATAGA TGGTGTATTACGTGATATTACCAAACTTCCTCTAGAAATTAGCCGTAAGGTGATTGTTGCCCTGAAAGTTATGTCTGAAA TGGACATTGCTGAAAGTAGGCGACCACAAGATGGACGTATTAGCGAGAAATATAATAGCCCTGAAGAGGCGGAACAGGGT ATGGATTTGCGGGTAAGTACCCTTCCCTGTGTTGGTGGCGAAAAAGTAGTAATTCGCTTATTGCCTCGCCAAAACCCGTT TACTGATATGAATAAATTGGGATTTGCTCCCGAAGCAATGCAAACTTACAGTGGTTGGTTACAGCAACCGCAAGGAATGA TTATTATTACAGGACCTACGGGTTCTGGTAAAACCAGTACGCTGTATACCAGTTTGCAAGAAGTAGCAACAGAAGAAGTA AATGTCGTTACAGTAGAAGACCCCGTAGAGTATGTATTGCCACGCATTACCCAAACTCAGGTAAATGAAGCAGCAGGAAT GACCTTTGCTGCTGGGTTACGCTCGATTCTGCGCCAAGACCCAGACATCATTATGTTAGGGGAAATTCGCGACAAAGAAA CAGCAGAAACAGCAGTACGCGCGGCATTGACAGGACACTTAGTTTTAACTACTCTACACACTAACGATGCTCCAGGCGCT ATTCCTAGATTAAAAGATATTGGCCCTGATCCAAGTTTAATTAGTGATGCTTTGTTGGGAATTGTTGCTCAACGTTTAGT ACGCCGAGTTTGTCTTCATTGTGCAGAACCTTACAAACCTACTGAAGCAGATTTAAGAGTATTAGGATTAGATCCCAAAT ATGCTAATCGAGATACCTGGAAACGTGGCAAAGGTTGTCCTAAATGTTTTAATTCTGGCTATTGGGGACGAGAGGCAATT GTTGAGTTGCTGAATGTCGATGAGACAGTGCGAGAGATTATTTATGATGGAAGTATGACTCAGTTAAATAGATATCTTAA GGAAATCAATTTTGTTTCTTTCCGCATATCAGCTATTGAAAAAATTACGACAGGAGCAACTACAATTGAGGAAGTATTGC GAGTTTTACCACTTAGTACATTTTCCCGTAATCGTAAGCTTAGTCCATCCCCTACAATAGAACAATTTAGTTCAACTATT AAAAACTAA Protein sequence : MQTPSQNITSAWRKLRNHEITCEQALKTLVDEQGNVALKLLDREVTYRFFKHFPDKNILPPLIPLLLWRGSYYLGSPTAV ELELIRELSDRTLTEIKIIPVSKKSYSTWQNIQKIDSKLQSSSQSINSISREQEQEDISEVTEVFLSQSVDQIARIKTLI AAALRNRASDVHLEPMTEGLRVRYRIDGVLRDITKLPLEISRKVIVALKVMSEMDIAESRRPQDGRISEKYNSPEEAEQG MDLRVSTLPCVGGEKVVIRLLPRQNPFTDMNKLGFAPEAMQTYSGWLQQPQGMIIITGPTGSGKTSTLYTSLQEVATEEV NVVTVEDPVEYVLPRITQTQVNEAAGMTFAAGLRSILRQDPDIIMLGEIRDKETAETAVRAALTGHLVLTTLHTNDAPGA IPRLKDIGPDPSLISDALLGIVAQRLVRRVCLHCAEPYKPTEADLRVLGLDPKYANRDTWKRGKGCPKCFNSGYWGREAI VELLNVDETVREIIYDGSMTQLNRYLKEINFVSFRISAIEKITTGATTIEEVLRVLPLSTFSRNRKLSPSPTIEQFSSTI KN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-64 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-64 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cri9333_4240 | YP_007144539.1 | type II secretion system protein E (GspE) | VFG0182 | Protein | 4e-66 | 47 |
| Cri9333_4240 | YP_007144539.1 | type II secretion system protein E (GspE) | VFG2048 | Protein | 6e-65 | 44 |
