Gene Information

Name : Cri9333_3978 (Cri9333_3978)
Accession : YP_007144295.1
Strain : Crinalium epipsammum PCC 9333
Genome accession: NC_019753
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4500993 - 4501745 bp
Length : 753 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cyc:PCC7424_36

DNA sequence :
ATGCTTACTCTAGATATGCCGAAAAGTCCCTCCAGCACAAAACTAGGGCAGACAAGCCGAATTCTGTTGGTAGAAGACGA
AGACTTAATTCGGGAGATGCTAGTTGTCTCCTTGCAAGAAGAAGGTTATGAAGTCGTCACTGCCATCGACGGGCGGACAG
CATTAACATTTCTCCAAAATCCTGAAACCACAAACATTGAATTTCCCTTCGATCTAATTATCTTAGATTTAATGCTGCCT
CAAGTTAACGGGCTAGATTTATGTCGATTGCTGAGACATCAAGGAAACCCTGTGCCAATTTTGATTGTCAGTGCTAAGGC
TAGTGAAACAGACCGAGTTTTAGGTCTTGAAGTAGGTGCTGATGACTACATTACTAAACCATTCAGTATGCGGGAATTGA
TTGCCCGTTGCCGTGCATTATTACGACGGCATCGCTTCAGCTTTTCAACTCCAACTCCTGTACTGCAATATAAGGATATA
GTTGTTTATCCCCAAGAGTGCCGAGTGTTAATCCGCTCGGAAGAAGTCAATCTTTCGCCCAAAGAGTTTCGACTGTTAGA
ATTATTTATGAGTTATCCCCGTCGGGTTTGGTCACGGGAGCAGTTGATCGACCAAGTGTGGGGAGGAGATTTTGTTGGAG
ATACTAAAACTGTAGATGTGCATATTCGCTGGTTGCGAGAAAAATTAGAGCGAGATCCTAGTCAGCCGGAATATCTCATC
ACCGTTCGTGGATTTGGCTACCGCTTTGGTTAA

Protein sequence :
MLTLDMPKSPSSTKLGQTSRILLVEDEDLIREMLVVSLQEEGYEVVTAIDGRTALTFLQNPETTNIEFPFDLIILDLMLP
QVNGLDLCRLLRHQGNPVPILIVSAKASETDRVLGLEVGADDYITKPFSMRELIARCRALLRRHRFSFSTPTPVLQYKDI
VVYPQECRVLIRSEEVNLSPKEFRLLELFMSYPRRVWSREQLIDQVWGGDFVGDTKTVDVHIRWLREKLERDPSQPEYLI
TVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-38 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 5e-41 46
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 4e-46 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 2e-40 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 1e-43 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 9e-37 44
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 3e-30 43
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 2e-42 43
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator FJ349556.1.orf0.gene Protein 3e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator VFG1563 Protein 2e-38 42
Cri9333_3978 YP_007144295.1 winged helix family two component transcriptional regulator VFG1702 Protein 3e-38 42