Gene Information

Name : Cal6303_4117 (Cal6303_4117)
Accession : YP_007139003.1
Strain : Calothrix sp. PCC 6303
Genome accession: NC_019751
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4926345 - 4928798 bp
Length : 2454 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit

DNA sequence :
ATGTTTGAACACTTCACTTCCCAAGCCATTCGGGTAATCATGTTAGCTCAGGAGGAAGCTCGTCGCCTGGGTCATAACTT
TGTCGGTACAGAGCAAATTCTCCTGGGGCTGATTGGAGAAGGAAACGGGGTTGCTGCTAAAGTACTCGTTGATTTGGGTG
TCACACTCAAAGACGCACGCCGCGAAGTCGAAAAAATTATTGGTAGGGGTTCTGGTTTCGTACCACCTGAGATTCCTTTT
ACTCCTAAAGTTAAAAGTCTATTTGAGCAAGCTTTTAAAGAAGCGCGATCGCTTGGCAACAATTACATTAGTACTGAACA
TTTATTATTAGGTTTAACTGAAGCCGGAGAAGGCGTAGCCGCTAAGGTTTTACAAAATCTAGGTATCGATTTATCTGAAG
TTCGGACTGCTGTAATTCGCCGTCTAGGCGATGATGTAGCTGTTGCCCCAGGCGCAGGTGCTAGCAGCGGTGGGCAACGC
CGTAACCAACAAAGTCTGATGCTGGAAGAGTTTGGCAAAAATCTCACCAAACTAGCACAGGAAGGTAAATTAGACCCAGT
TGTCGGACGGGCAAACGAAATAGAACGCGCCGTCCAAATACTTGGTCGGCGCACCAAAAACAATCCGGTATTGATTGGTG
AACCGGGTGTAGGCAAAACAGCGATCGCTGAAGGGCTAGCACAACGTATTGTCAACCAAGATGTACCAGAGATTCTCTTA
GGGAAACAGGTTGTCAGCCTCGATATGGGCTTAATGGTGGCGGGAACCCGCTTCCGTGGCGACTTTGAAGAACGCCTAAA
AAAAGTAATGGAAGAAATCCGTACCGAGGGAAATATCATCCTCGTAATCGATGAAATCCATACCTTAGTAGGTGCAGGTG
GTGTTGAAGGCGGTATGGATGCCGCTAACATCATGAAACCAGCCCTAGCAAGGGGTGAACTTCAATGTTTGGGTGCCACA
ACCCTGAATGAGTATCGCAACATCGAACGGGATGCAGCTTTAGAAAGACGCTTCCAACCGATTTTGGTGGGTGAACCTTC
AGTAGAAGAAACCATTCATATTTTGCAGGGTTTGCGCTCTGTTTATGAACAGCATCACCGCGTCACCATTACCGATGAGG
CACTGCAAGCAGCGGCAGAACTATCAGATCGTTACATAAGCGATCGCTTCCTCCCTGACAAGGCGATAGACTTGATCGAT
GAAGCTGGTTCCCGCGTCCGCTTACGCAATTCGCAAATTTCCCAAAGCCGCGAACTCAAGCGCCAACTACGCTCACTCAG
CAAGGAAAAAGACGAAGCTGTCCGCGTTCAAGACTTCGAGAAGGCTGGACAACTACGGGACAAAGAAATCGAACTGGAAG
GGCAAATTCAAGCCGAATCCAGCGACTACAACAATAATCCCATTGTCAACGAGGAAGATATCGCCCAAATCGTGGCTTCC
TGGACAGGGGTACCCGTCAACAAACTAACCGAGTCGGAATCAGAGATGCTGATGCATCTAGAAGATACCCTACATCAACG
GTTAATTGGACAGGAACAAGCAGTCACAGCCGTCTCCCGTGCCGTTCGTCGTGCCCGCGTCGGCTTGAAGAACCCCAATC
GACCCATCGCTAGCTTTATCTTCTCAGGACCTACTGGTGTGGGTAAAACTGAATTGGCGAAGTCCTTGGCAGCCTACTTC
TTTGGTGCCGAAGATGCGATGATTCGTTTAGATATGTCCGAGTTTATGGAGCGTCATACCGTTTCCAAACTCATCGGTTC
ACCCCCAGGTTATGTAGGCTACGAAGAAGGTGGACAACTTACAGAAGCAGTACGCCGCAAACCCTACACAGTCATCCTGT
TTGATGAAATTGAGAAGGCACACCCCGATGTGTTTAATATGCTGCTACAACTCCTTGATGATGGGCATCTTACTGATGCT
AAAGGACGAAAAGTAGACTTCAAAAACACCTTGATTATCTTGACTTCTAATATTGGTTCCAAGGTAATTGAAAAAGGTGG
TGGTGGTATCGGTTTCCAATTCGACGATGCATCGGAAGCTAGTTACAACCGGATCAAAACCCTGGTGAACGAAGAACTGA
AGAACTTCTTCCGTCCCGAATTCCTCAACCGTCTTGACGATATTATCGTCTTCACACAGTTGAATAAGGACGAAGTGAAG
CAAATCGCCGAAATTATGCTTCTGGATGTCGGTTCCCGTCTCAAAGAAAGAGGTATTATTCTCCAGGTTTCAGATCGCTT
CAAAGAGCGAGTTGTTCAAGAAGGTTATGACCCCAGTTATGGTGCCAGACCCCTACGTCGAGCAATTATGCGCCTGTTGG
AAGATTCCCTCGCTGAAGCAATGCTTTCTGGTCAAATAGTTGATGGGGATACCGCACTCATTGATGTTGATGATGATGGC
AAGGTGAAGGTTATTAAGTCTGAGAGTCGAGAGTTACTTTTAGCAAGTATCTAA

Protein sequence :
MFEHFTSQAIRVIMLAQEEARRLGHNFVGTEQILLGLIGEGNGVAAKVLVDLGVTLKDARREVEKIIGRGSGFVPPEIPF
TPKVKSLFEQAFKEARSLGNNYISTEHLLLGLTEAGEGVAAKVLQNLGIDLSEVRTAVIRRLGDDVAVAPGAGASSGGQR
RNQQSLMLEEFGKNLTKLAQEGKLDPVVGRANEIERAVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNQDVPEILL
GKQVVSLDMGLMVAGTRFRGDFEERLKKVMEEIRTEGNIILVIDEIHTLVGAGGVEGGMDAANIMKPALARGELQCLGAT
TLNEYRNIERDAALERRFQPILVGEPSVEETIHILQGLRSVYEQHHRVTITDEALQAAAELSDRYISDRFLPDKAIDLID
EAGSRVRLRNSQISQSRELKRQLRSLSKEKDEAVRVQDFEKAGQLRDKEIELEGQIQAESSDYNNNPIVNEEDIAQIVAS
WTGVPVNKLTESESEMLMHLEDTLHQRLIGQEQAVTAVSRAVRRARVGLKNPNRPIASFIFSGPTGVGKTELAKSLAAYF
FGAEDAMIRLDMSEFMERHTVSKLIGSPPGYVGYEEGGQLTEAVRRKPYTVILFDEIEKAHPDVFNMLLQLLDDGHLTDA
KGRKVDFKNTLIILTSNIGSKVIEKGGGGIGFQFDDASEASYNRIKTLVNEELKNFFRPEFLNRLDDIIVFTQLNKDEVK
QIAEIMLLDVGSRLKERGIILQVSDRFKERVVQEGYDPSYGARPLRRAIMRLLEDSLAEAMLSGQIVDGDTALIDVDDDG
KVKVIKSESRELLLASI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cal6303_4117 YP_007139003.1 ATPase VFG0079 Protein 0.0 57
Cal6303_4117 YP_007139003.1 ATPase VFG0080 Protein 8e-161 54