Gene Information

Name : GEI7407_0580 (GEI7407_0580)
Accession : YP_007108130.1
Strain : Geitlerinema sp. PCC 7407
Genome accession: NC_019703
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 706300 - 707190 bp
Length : 891 bp
Strand : +
Note : PFAM: ABC 3 transport family; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: ava:Ava_1599 hypothetical protein; PFAM: ABC-3 protein; SPTR: Permease protein of ABC transporter

DNA sequence :
ATGGAGGCGCTCTTGGAGCCTTTGCAGTACGGCTTCATGCAGCGATCGCTGATTATTGCCGTGCTGGTGGGCATCGTGTG
CGCCTTGGTGGGCAGCTATCTGATGGTGCAGCGCCTCGCTTTGCTGGGGGACGCGATTAGCCACTCTGTCTTGCCGGGGC
TGGCGATCGCCTTTTTGCTGGATCTCAATTTATTTATTGGCGCCTTTATTGCTGGGATGCTCAGCACGGTGGCGATCGCC
TGGATTCGCACGCGATCGCCCATCAAAGAAGACGCCGCCATGGGCATTGTTTTTTCGGCCTTCTTTGCCCTGGGCATCAC
GCTGATCACCGTGGTGCAAAAAGACAACAAAATCGACCTCAACCACTTCTTGTTCGGCAACATCCTCGGCGTGACCGGGG
GCGACGTGCGCGACACCGCCATTATTGCCGCCATCGTCGTGATCACCGTCGGCCTGCTGTACAAAGAGCTGCTGTTTTAT
ACCTTTGACCCCCTGGGTGCCCAGGCCGTGGGCCTGCCGGTCAACCTGCTGAACTTCGGCCTGATGGCCCTAATCGCCCT
CACCGTCGTCGCTAGCCTCAAAGCCGTTGGCGTCGTCCTGGTGCTGTCTCTGCTGATCACGCCGGGCGCAACGGCCTACC
TGCTGGTGCCGCGCCTGCATCAGGTGATGCTGCTGGGAGCCGTGATTGGCGTGATTTCCAGCATCAGCGGCATGTACCTG
AGCTACTGGTACAACCTCCCGTCGGGGCCGGCCATCGTGCTGGTGGTGTCGGGTTTTTTTGTGCTGGCGCTGCTGTTTAG
CCCGCTCTATGGGGTGCTGACCCAGCCGGGGCGGGGCAGCCTGGAGATTCCGCTGTGGCGAGAGATCCGGACTCTGTGGC
GATCGCGCTAG

Protein sequence :
MEALLEPLQYGFMQRSLIIAVLVGIVCALVGSYLMVQRLALLGDAISHSVLPGLAIAFLLDLNLFIGAFIAGMLSTVAIA
WIRTRSPIKEDAAMGIVFSAFFALGITLITVVQKDNKIDLNHFLFGNILGVTGGDVRDTAIIAAIVVITVGLLYKELLFY
TFDPLGAQAVGLPVNLLNFGLMALIALTVVASLKAVGVVLVLSLLITPGATAYLLVPRLHQVMLLGAVIGVISSISGMYL
SYWYNLPSGPAIVLVVSGFFVLALLFSPLYGVLTQPGRGSLEIPLWREIRTLWRSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-47 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-47 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-47 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-47 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-47 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-47 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-47 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEI7407_0580 YP_007108130.1 ABC-3 protein BAC0352 Protein 7e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEI7407_0580 YP_007108130.1 ABC-3 protein VFG0528 Protein 6e-48 42