Gene Information

Name : GEI7407_0504 (GEI7407_0504)
Accession : YP_007108056.1
Strain : Geitlerinema sp. PCC 7407
Genome accession: NC_019703
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 620022 - 622490 bp
Length : 2469 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; UvrB/uvrC motif; ATPase family associated with various cellular activities (AAA); COGs: COG0542 ATPase with chaperone activity ATP-binding subunit

DNA sequence :
ATGTTTGAACGCTTCACAGAAAAAGCCATTAAAGTGATCATGTTGGCTCAGGAGGAAGCTCGCCGCCTGGGACACAACTT
TGTGGGTACAGAACAGATCCTCTTGGGTCTGATTGGAGAAGGGACCGGCGTCGCCGCCAAAGTGCTGAAATCCATGGGGG
TCAACCTCAAGGATGCTCGCATTGAAGTTGAAAAGATTATCGGTCGGGGCTCTGGCTTCGTTGCCGTTGAGATCCCGTTT
ACGCCTCGAGCGAAGCGCGTTTTGGAACTCTCGCTCGAAGAGGCCCGCCAGCTTGGCCACAACTACATCGGCACTGAACA
CCTGCTCTTGGGTCTGATCCGCGAAGGAGAGGGCGTTGCAGCTCGCGTTTTGGAAAACCTGGGCGTTGACCTGTCGAAGG
TGCGCACTCAGGTAATCCGGATGCTGGGTGAGACGGCCGAAGTCTCGACGGGTGGCTCCCAAGGCCGGACCAAGACGCCA
ACGCTGGATGAGTTTGGCTCAAATCTGACGCAGATGGCTGCGGAGGGCAAGCTCGATCCGGTGGTGGGCCGCCAAAAAGA
AATTGAGCGGGTGATCCAGATTTTGGGTCGCCGCACCAAGAACAACCCGGTCTTGATCGGGGAGCCAGGGGTCGGTAAGA
CGGCGATTGCCGAAGGGCTAGCCCAGCGCATCGCCAACGCCGACGTGCCCGACATCCTCGAAGACAAGCGGGTTGTCACC
CTCGATATCGGTCTGCTGGTGGCAGGCACCAAGTACCGAGGCGAGTTTGAAGAGCGCCTCAAGAAGATCATGGACGAGAT
CCGCTCGGCCGGAAACGTCATCCTGGTCATCGACGAGGTGCACACCCTGATCGGCGCGGGTGCCGCAGAGGGCGCGATCG
ACGCGGCCAATATCCTCAAGCCAGCTCTGGCTCGGGGTGAACTGCAGTGCATCGGCGCGACGACCCTCGACGAGTACCGC
AAGCACATCGAGCGAGACGCCGCTCTAGAGCGACGCTTCCAGCCGGTGATGGTGGGTGAGCCTTCGGTGCAGGAGACCAT
CGAGATTCTCCATGGCCTGCGCGATCGCTATGAGCAGCACCACAAGCTGAAGATCAGCGATGAAGCGCTAGAAGCAGCCG
CCAAGCTGTCTGATCGCTACATCTCCGATCGCTACCTGCCCGACAAGGCGATCGACTTGATCGACGAGGCGGGCTCTCGG
GTTCGCCTGATCAACTCCCAGCTGCCACCGGCCGCCAAGGAGCTCGATCGCGAACTGCGCCAAGTCCTCAAGGAGAAGGA
CGAAGCGGTCCGCTCCCAGGACTTTGACCGGGCCGGCGAACTGCGCGATCGCGAGATGGAAATCAAAGCTGAAATCCGCT
CGATCGCCCAGAACCGCAAGAACGAAGGCGGCACCACCGAGGACAGCCCCTTCGTGACCGAAGAGGACATCGCCCAAATC
GTGGCCTCTTGGACCGGCGTCCCCGTGAACAAACTCACCGAGTCCGAGTCCGAGAAGCTGCTGCACATGGAGGACACCCT
CCACAATCGCCTAATCGGCCAAGACGAAGCCGTCAAAGCGGTCTCGCGCGCCATTCGCCGCGCTCGAGTGGGCCTCAAAA
ACCCCAACCGCCCCATTGCCAGCTTCATCTTCTCGGGTCCGACCGGCGTTGGTAAGACCGAGCTCACCAAGGCTCTGGCG
TCCTACTTCTTCGGCTCCGAAGATGCCATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCACACCGTCTCCAAGCT
CATCGGTTCGCCTCCGGGCTACGTGGGCTACAACGAAGGCGGTCAGCTCACCGAAGCCGTCCGTCGTCGGCCCTACACCG
TTGTGCTGTTCGACGAGATCGAGAAGGCGCACCCCGACGTCTTCAACATGCTGCTGCAAATCCTGGAAGATGGTCGCCTG
ACCGACGCCAAGGGTCGCACGGTGGACTTCAAGAACACGCTGCTGATCATGACCTCCAACATCGGTTCGAAGGTCATCGA
GAAGGGCGGCGGCGGCCTCGGCTTCGAGTTTGCAGAAGACCAAGCCGACTCCCAGTACAACCGGATCCGATCGCTGGTGA
ACGAAGAGCTGAAGCAGTACTTCCGCCCTGAGTTCCTCAACCGGGTTGACGAGATCATCGTCTTCCGCCAGCTCAAGAAG
GACGAGGTCAAGGAAATCGCCGACATCATGCTGCACGAAGTCTTTGGTCGCCTCGGCGAGCAGGGCATCGTTCTGGAAGT
CACCGAGCGCTTCAAGGATCGCCTAGTGGAAGAAGGTTACAACCCGAGCTACGGAGCCCGTCCCCTGCGTCGCGCTATCA
TGCGACTGCTCGAGGACTCTCTGGCAGAGGAAATCCTCTCGGGCCGCATTCAGGAAGGCGACACCGCCGTCGTGGATGTG
GATGAGGAAGGACAGGTGAAGGTTCTGCCCGGCGAGAAGCGCGAACTGCTGTCGCCCGCGGTTGAATAA

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSTGGSQGRTKTP
TLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANADVPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVQETIEILHGLRDRYEQHHKLKISDEALEAAAKLSDRYISDRYLPDKAIDLIDEAGSR
VRLINSQLPPAAKELDRELRQVLKEKDEAVRSQDFDRAGELRDREMEIKAEIRSIAQNRKNEGGTTEDSPFVTEEDIAQI
VASWTGVPVNKLTESESEKLLHMEDTLHNRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALA
SYFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRL
TDAKGRTVDFKNTLLIMTSNIGSKVIEKGGGGLGFEFAEDQADSQYNRIRSLVNEELKQYFRPEFLNRVDEIIVFRQLKK
DEVKEIADIMLHEVFGRLGEQGIVLEVTERFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILSGRIQEGDTAVVDV
DEEGQVKVLPGEKRELLSPAVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEI7407_0504 YP_007108056.1 ATPase VFG0079 Protein 0.0 61
GEI7407_0504 YP_007108056.1 ATPase VFG0080 Protein 6e-157 52