Gene Information

Name : GEI7407_3751 (GEI7407_3751)
Accession : YP_007111270.1
Strain : Geitlerinema sp. PCC 7407
Genome accession: NC_019703
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4569999 - 4570682 bp
Length : 684 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: npu:Npun_R6360

DNA sequence : 
ATGCGCATCCTCTTGGTTGATGACGAAGCGGCCATGGCAGACCCCCTGAGTCGCCAGCTCATGCGGGAAGGCTACGCGGT
GGATGTGGCCTACGACGGCTCGACGGGCGGCGCTTTGGCGGCCCAGGGCCAGTATGATCTGCTGATTTTGGACTGGATGC
TGCCCCAGCGATCGGGTATCGAGATTTGCCAAGAGCGGCGATCGCGCGGAGACACGACCCCGGTGCTCTTTCTCACGGCC
AAGGACACCGTGGACGATCGCGTCGAGGGCCTAGACGCCGGGGCCGATGACTATCTGGTCAAGCCCTTTGAGCTGCGAGA
GCTGCTGGCGCGGGTGCGGGCGCTGCTGCGACGCCCAGCGACCCTGGAGTCCCCGACCCCCAGCCAGCGCCTGACCCTCG
AAGATCTCGTGCTCGATCGCGACAACCAAGTGGCCTACCGCCAGGGCCGCACCATCGAGCTATCTGAAAAAGAAGAAAAG
CTCTTGGCGTACTTTATGCAGCACGGGGGGCAGCTGCTCACCCACGAGCAGATCCACGGCTATCTGTGGGGCGACACCAA
CCGCCCCAGCAGCAACGTGCTGGCGGCCCAGGTGCGTCTCCTGCGCCGCAAGATCGAAGCCCCTGGCGAGAAGGTGCTGA
TCCACACCATCTACGGCAAGGGCTATCGCTTTGGGGAGGCCTAG

Protein sequence : 
MRILLVDDEAAMADPLSRQLMREGYAVDVAYDGSTGGALAAQGQYDLLILDWMLPQRSGIEICQERRSRGDTTPVLFLTA
KDTVDDRVEGLDAGADDYLVKPFELRELLARVRALLRRPATLESPTPSQRLTLEDLVLDRDNQVAYRQGRTIELSEKEEK
LLAYFMQHGGQLLTHEQIHGYLWGDTNRPSSNVLAAQVRLLRRKIEAPGEKVLIHTIYGKGYRFGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-26 45
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0308 Protein 9e-28 44
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0288 Protein 7e-30 43
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-26 43
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-29 42
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-25 42
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0111 Protein 8e-27 42
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-21 41
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 2e-28 41
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator CP001485.1.gene721.p Protein 3e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-29 46
GEI7407_3751 YP_007111270.1 winged helix family two component transcriptional regulator VFG0596 Protein 4e-27 41