Gene Information

Name : Syn7502_02513 (Syn7502_02513)
Accession : YP_007106621.1
Strain : Synechococcus sp. PCC 7502
Genome accession: NC_019702
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2489709 - 2490545 bp
Length : 837 bp
Strand : +
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGGCAGTTGTGGAATGGTTTACAGCACCCCTTACCTATGATTTTATGGTGCGGGCAATTTTAATTAGTGGTTTTATCGG
GATCGTGTGTGCGGTACTTTCTTGTTTTATGACCCTCAAAGGTTGGGCATTAATGGGTGATGCGGTTTCTCACTCCGTAA
CCCCTGGGGTAGTGTTAGCGCATATTTTAGGATTACCCTTTGCCGTTGGTGCCTTTGTGTTTGGGGTTGGCTCCGTGCTG
GCGATCGGTTTTATTAAATCTCACACCCGCATTAAAGAAGATACGGTGATTGGCTTGGTATTCACTGGCTTTTTTGCCTT
GGGATTAGTCCTAATTTCTAAAAATCCTAGCAATATTGATCTCAATCACATTTTATTTGGCAATGTTTTAGGCATTTCTA
CCCCAGACCTCATTCAAACCTTAATAATTGGCACTTTTACGCTGATCATAGTCTTACTCCTAAGAAAGGATTTACTGTTA
TTTTGCTTTGATCCGATTCATGCCCGTTCCATTGGCTTAAATGTGGAATTTCTCTACTATGTGTTGCTCACCTTACTATC
CCTAACCATTGTGGTAGCATTACAGGCTGTAGGGATTATTTTAGTGGTGGCGATGTTGGTTACGCCGGGGGCGATCGCCT
ATTTATTAACAGATCGATTTGATCACATGCTTGGCTATGCAGTTTTGTCTGGGGTTTTTTCTAATATTATGGGTACCTAT
ATTAGCTTTCACTTTGATGCTTCTACGGGTGGATGTATTGTGGTTCTACAAACGCTTTTATTCCTAATAGCGATGATTTT
TGCGCCAAAGTATGGACTCTTAAGGCGTAAACTTTGA

Protein sequence : 
MAVVEWFTAPLTYDFMVRAILISGFIGIVCAVLSCFMTLKGWALMGDAVSHSVTPGVVLAHILGLPFAVGAFVFGVGSVL
AIGFIKSHTRIKEDTVIGLVFTGFFALGLVLISKNPSNIDLNHILFGNVLGISTPDLIQTLIIGTFTLIIVLLLRKDLLL
FCFDPIHARSIGLNVEFLYYVLLTLLSLTIVVALQAVGIILVVAMLVTPGAIAYLLTDRFDHMLGYAVLSGVFSNIMGTY
ISFHFDASTGGCIVVLQTLLFLIAMIFAPKYGLLRRKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-40 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-40 50
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-46 49
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-46 49
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-46 49
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-46 49
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-46 49
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-40 49
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-40 49
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-40 49
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-33 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 8e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn7502_02513 YP_007106621.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 1e-54 55
Syn7502_02513 YP_007106621.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 4e-43 51
Syn7502_02513 YP_007106621.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 1e-40 50
Syn7502_02513 YP_007106621.1 Mn2+/Zn2+ ABC transporter permease BAC0351 Protein 9e-47 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn7502_02513 YP_007106621.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 1e-40 50
Syn7502_02513 YP_007106621.1 Mn2+/Zn2+ ABC transporter permease VFG0527 Protein 9e-47 49