Gene Information

Name : Cha6605_0636 (Cha6605_0636)
Accession : YP_007095440.1
Strain : Chamaesiphon minutus PCC 6605
Genome accession: NC_019697
Putative virulence/resistance : Virulence
Product : ABC-type metal ion transport system, periplasmic component/surface adhesin
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 684014 - 685012 bp
Length : 999 bp
Strand : -
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
ATGGGTCGTAAACTCGGACTAAACTACGCCTGGAATAAACCCACAGCCGACACCCATCGATCGCGGCAGCCTCTCAACAT
AGCCGTCCCCAAACAACAGACAATCGCCGGACTGGCATTATTACTGACGCTCTGGCTCAGCGGCTGCACCTCACCAGCCA
ACCGCACCACACCAACCGATCGTAAAGTAGTTTTAACAACCTTTACCGTCATCGCCGACATGGCACGCAACGTTGCAGGC
GATAAAGTAAACGTAGAATCGATCGTCAAACCCGGTGCTGAAATCCACGGTTACGAACCCACCCCCAGCGACCTAGCCAG
AGGACAAAACGCAACCGCAATCTTGGATAACGGCCTCAATTTAGAACGATGGGCGGCCAGATTTTACAACAGTTTGCCCA
AAGTACCCCAGACTACCCTGAGCGAGGGAGTCGAACCAGTCTCGATTGCCAGCGATGCCTCCAAAGGTAAACCCAACCCT
CACGCCTGGATGTCTCCCAAAAACGCCCTGATTTACGTCGAGAACATCCGTAAAGCTTTGAGCAAAATCGATCCGGCTAA
CGCCAAAACCTACGACACCAACGCCGCAACTTACAGCCAACAAATTCGGGCACTCGATACCAAACTCAAACAAGCCGTTG
CCAAGATTCCGGCTGACAAACGTTACCTAGTTAGTTGCGAAGGTGCATTTACCTACATTGCCCGCGACTATGGACTCACT
GAAGTCTACATCTGGCCAGTTAACGCCGAACAACAAGCCACACCCAAACAAGTCGAACGAGTCATCGATACCGTCAGAGC
CAAACAGATTCCCACCGTATTTTGTGAAAGCACCGTCGATAATCGCGCGCAGCGACAGGTAGCCAAAGAAACAGGTGCAA
AATTTGGCGGTGTATTTTATGTCGATTCGCTCTCCCCACCGAATGGCCCCGCGCCAACTTATTTAAAACTATTGGAATAC
AACATTAATATGCTGATAAAGGGAATGACAATCAAATGA

Protein sequence : 
MGRKLGLNYAWNKPTADTHRSRQPLNIAVPKQQTIAGLALLLTLWLSGCTSPANRTTPTDRKVVLTTFTVIADMARNVAG
DKVNVESIVKPGAEIHGYEPTPSDLARGQNATAILDNGLNLERWAARFYNSLPKVPQTTLSEGVEPVSIASDASKGKPNP
HAWMSPKNALIYVENIRKALSKIDPANAKTYDTNAATYSQQIRALDTKLKQAVAKIPADKRYLVSCEGAFTYIARDYGLT
EVYIWPVNAEQQATPKQVERVIDTVRAKQIPTVFCESTVDNRAQRQVAKETGAKFGGVFYVDSLSPPNGPAPTYLKLLEY
NINMLIKGMTIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 8e-79 58
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-79 58
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-79 58
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 8e-79 58
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 8e-79 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_0636 YP_007095440.1 ABC-type metal ion transport system, periplasmic component/surface adhesin BAC0349 Protein 4e-79 58
Cha6605_0636 YP_007095440.1 ABC-type metal ion transport system, periplasmic component/surface adhesin BAC0439 Protein 7e-76 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_0636 YP_007095440.1 ABC-type metal ion transport system, periplasmic component/surface adhesin VFG0525 Protein 3e-79 58