Gene Information

Name : Cha6605_4787 (Cha6605_4787)
Accession : YP_007099229.1
Strain : Chamaesiphon minutus PCC 6605
Genome accession: NC_019697
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5066487 - 5067167 bp
Length : 681 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGAACGATCGAATTCTTTTAGTTGAAGATGACCCAAAACTAGCAGGGTTAATTGAAGAAGAATTAACATTAGAAGGCTA
TCAGGTGACTGTCGCCCAAAATGGCTTAGACGGATTAACGATGGCCCGAAATATCCAGCCCGATCTGTTGATTTTAGATT
GGATGTTACCAGGAATTTCTGGACTAGACCTGTGTCTGCGTTTGCGATCGACTGGAATTCAGGTACCGATTATTATGCTC
ACTGCCAAAGATGAAATTCCCGATCGAGTTGCCGGATTAAATGCTGGAGCGGATGATTATGTCACTAAACCCTTCAGTAT
CGAAGAATTATTAGCAAGAGTAAAAGCCAGACTACGACGGTTGCAGTCTGAGGATATCGATCGATTTGAATTTGAAGACC
TAACGCTCAATCGTCTCACTCGTGAGGTTTATCGACAGGGGAAAATAGTCGAATTAACTGCCAAAGAATTCGATTTATTA
GAATATTTACTCCGACATCCTCGCCAAGTAATGACCCGCGAACAAATTTTGGAAAAAGTTTGGGGATATGATTTTATGGG
CGAGTCGAACATTATTGAAGTCTACATTCGTGCCCTACGGCTCAAATTAGAGGTAAATAATCCCAAACGCCTGCTATATA
CGATTCGTGGTGTGGGATATGTGTTGAAAGAATATGTATAA

Protein sequence :
MNDRILLVEDDPKLAGLIEEELTLEGYQVTVAQNGLDGLTMARNIQPDLLILDWMLPGISGLDLCLRLRSTGIQVPIIML
TAKDEIPDRVAGLNAGADDYVTKPFSIEELLARVKARLRRLQSEDIDRFEFEDLTLNRLTREVYRQGKIVELTAKEFDLL
EYLLRHPRQVMTREQILEKVWGYDFMGESNIIEVYIRALRLKLEVNNPKRLLYTIRGVGYVLKEYV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-29 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 2e-35 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 2e-31 48
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 1e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 3e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 1e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 2e-37 46
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-38 45
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 1e-30 44
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 3e-33 44
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 4e-33 44
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 1e-37 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 3e-35 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-35 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 3e-33 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 1e-30 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 4e-26 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 5e-30 42
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 5e-46 50
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-29 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 5e-41 43
Cha6605_4787 YP_007099229.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 3e-33 42