Gene Information

Name : Cha6605_4205 (Cha6605_4205)
Accession : YP_007098675.1
Strain : Chamaesiphon minutus PCC 6605
Genome accession: NC_019697
Putative virulence/resistance : Virulence
Product : glycosyl transferase possibly involved in lipopolysaccharide synthesis
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4426129 - 4426776 bp
Length : 648 bp
Strand : -
Note : PFAM: Bacterial sugar transferase

DNA sequence :
ATGATCCAAACCAAATCTTCCAACAATTTACTCCACTATTTTAGTCGAGGCATTAAACTATTTAGCGATCGAGTGATGGC
AGCATTGTTACTACTGTTATTTTCGCCGATACTACTTGTTGTGGCGATCGTCGTTCGCCTTCGCATGGGTAGCCCGGTTG
TCTTTACGCAAACCCGTCCCGGCAAAAATGGCAAGATTTTTACCGTGTTTAAGTTTCGCACGATGACTGATGATTGCGAT
GCTCAGGGTAAGTTATTATCGGATGAGGAACGGCTGATTCCTCTAGGTCAAGTGCTGCGCAAAGCCAGTCTCGACGAACT
GCCACAACTGTGGAACGTGCTCCGAGGCGACATGAGTTTCGTTGGCCCCCGTCCGCTGCTGGTAAGGTATCTAGAACGTT
ATAGCCCCGATCAAGCACGACGTCACGATGTTCGCCCCGGAATTACCGGATGGGCGCAAGTAAATGGTCGCAATGCGCTC
ACTTGGGACGAAAAATTCAAGCTAGATCTGTGGTATGTGGATAACTGGAGTCTTTGGTTGGATCTGAAGATTTTGCTGAT
GACTGTAGGGAAGGTAATCAAACGAGAAGGTATCAGCCAGAGCGCAGATATCGTCGCAATGCCAGAGTTTATGGGTAACG
ATAAATAA

Protein sequence :
MIQTKSSNNLLHYFSRGIKLFSDRVMAALLLLLFSPILLVVAIVVRLRMGSPVVFTQTRPGKNGKIFTVFKFRTMTDDCD
AQGKLLSDEERLIPLGQVLRKASLDELPQLWNVLRGDMSFVGPRPLLVRYLERYSPDQARRHDVRPGITGWAQVNGRNAL
TWDEKFKLDLWYVDNWSLWLDLKILLMTVGKVIKREGISQSADIVAMPEFMGNDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 3e-24 43
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 7e-24 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_4205 YP_007098675.1 glycosyl transferase possibly involved in lipopolysaccharide synthesis VFG1369 Protein 2e-21 42