Gene Information

Name : Cha6605_3811 (Cha6605_3811)
Accession : YP_007098309.1
Strain : Chamaesiphon minutus PCC 6605
Genome accession: NC_019697
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4008965 - 4009693 bp
Length : 729 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
TTGGAAAATCATAAGGAAACTATTCTGGTCGTTGATGATGAGGCTAGCATCCGCCGCATTTTAGAAACTCGCCTCTCCAT
GATTGGCTACGATGTAGTTACAGCGGCTGATGGGGAAGAAGCCCTAGAAACTTTTCGCGAAACCTGCCCCGATCTCGTCG
TGCTCGATGTGATGATGCCCAAGCTCGATGGCTATGGGGTGTGTCAGGAGCTACGCAAAGAATCTGATGTGCCGATTATC
ATGCTCACGGCGTTGGGCGATGTCGCCGATCGCATTACCGGGCTAGAATTGGGTGCGGATGACTATGTAGTCAAACCTTT
CTCTCCCAAAGAATTGGAAGCGCGAATCCGTTCGGTATTGCGGCGGGTGGATAAGAATGGACTCAATGGGATTCCTAGTT
CGGGAGTAATCCAGATTGCCACGATCAAGATCGACACTAATAAACGTCAAGTTTATAAATGTGACGAACGGATTCGGCTT
ACGGGGATGGAGTTTAGTCTGCTCGAACTGCTCGTAAGTAGATCGGGCGAAGCTTTTTCGCGATCGGAAATCTTGCAAGA
AGTTTGGGGTTACACTCCCGAACGTCATGTCGATACGCGAGTTGTAGATGTCCATATTTCTCGGCTCCGCGCCAAGTTAG
AAGAAGATCCCAGCAATCCCGAACTCATCCTCACCGCTAGAGGTACGGGTTATTTATTTCAGCGCATTATCGAGCCTGAT
GAAATCTAG

Protein sequence :
MENHKETILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRETCPDLVVLDVMMPKLDGYGVCQELRKESDVPII
MLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGLNGIPSSGVIQIATIKIDTNKRQVYKCDERIRL
TGMEFSLLELLVSRSGEAFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRIIEPD
EI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 4e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 4e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 6e-46 49
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 7e-46 48
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-43 47
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-37 46
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-43 46
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 1e-40 45
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3671. Protein 4e-38 44
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 1e-34 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001485.1.gene721.p Protein 3e-33 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene5135. Protein 2e-25 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 2e-28 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 6e-40 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 7e-33 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 2e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000675.2.gene1535. Protein 1e-36 41
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene3215. Protein 7e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 3e-38 43
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 1e-32 43
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 3e-30 42
Cha6605_3811 YP_007098309.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 2e-36 42