Gene Information

Name : Chro_5470 (Chro_5470)
Accession : YP_007094701.1
Strain : Chroococcidiopsis thermalis PCC 7203
Genome accession: NC_019695
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6151307 - 6153781 bp
Length : 2475 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit

DNA sequence :
ATGTTTGAACGCTTCACAGAAAAAGCAATTAAGGTGATCATGCTGGCCCAGGAAGAAGCTCGCCGCCTGGGTCACAACTT
CGTAGGCACAGAGCAGATCCTCCTGGGTCTGATTGGAGAAGGCACGGGCGTAGCAGCTAAAGTCCTCAAAACGATGGGTG
TCAATCTCAAAGATGCCCGGATCGAAGTAGAGAAAATTATCGGACGCGGCTCGGGATTTGTAGCTGTAGAAATTCCCTTC
ACCCCAAGAGCGAAGCGGGTTCTGGAGCTATCTTTAGAAGAAGCTCGCCAATTAGGGCATAACTACATTGGCACTGAGCA
TCTCCTGTTGGGTCTGATCCGTGAAGGAGAAGGCGTAGCGGCTAGAGTGTTAGAAAACTTGGGAGTTGACCTATCGAAGG
TACGCACTCAGGTAATTCGCATGTTGGGAGAAACGGCTGAAGTTTCGGCAGGCTCCCAGTCTGGACGCACCAAGACCCCC
ACATTGGACGAGTTCGGTTCCAATTTGACCCAAATGGCAGGAGAAGGCAAACTCGATCCTGTAGTCGGTCGTGAAAAAGA
AATCGAGCGCGTGATTCAGATTCTGGGTCGGCGCACGAAAAACAACCCCGTGCTGATCGGGGAGCCAGGGGTAGGTAAGA
CCGCGATCGCTGAAGGTTTAGCCTCTCGGATCGCCAACAAAGACGTACCCGACATTTTGGAAGAAAAGCGCGTCGTCACC
CTCGACATTGGCTTGCTCGTAGCAGGTACGAAATATCGAGGTGAATTTGAAGAGCGCCTGAAGAAGATCATGGACGAAAT
CCGTTCTGCTGGGAACGTGATTTTGGTAATTGACGAGGTGCATACCCTGATCGGTGCGGGTGCAGCAGAAGGGGCGATCG
ATGCAGCAAACATCCTGAAGCCAGCTTTGGCGCGGGGTGAATTGCAATGTATCGGTGCAACAACCCTTGATGAGTATCGC
AAGCACATCGAGCGGGATGCAGCCCTAGAACGACGCTTCCAACCCGTGATGGTGGGCGAACCTTCCGTTGATGAAACGAT
TGAAATTCTCTTCGGACTGCGCGATCGCTACGAGCAGCACCACAAGCTGAAAATCTCCGATGCGGCGCTAGAAGCAGCAG
CCAAACTGTCCGACCGTTATATTAGCGATCGCTACCTGCCAGACAAAGCCATTGACTTAATCGACGAAGCAGGTTCGCGG
GTACGGTTAATTAACTCTCAGTTACCCCCAGCAGCGAAGGAATTAGATAAAGAACTGCGTCAAGTATTGAAAGAAAAAGA
CGACGCTGTACGCACTCAAGATTTCGACCGGGCGGGAGAACTGCGCGATCGCGAAATGGAACTAAGAGCAGAAATTCGAG
CGATCGCTCAATCCAAAACAGGTACTACTAAGAGCGAGGGTGATGACTCTCCCGTAGTCACGGAAGAAGATATCGCTCAA
ATCGTTGCTTCTTGGACTGGCGTACCAGTCAACAAGCTGACCGAATCCGAGTCTGAAAAGCTGCTGCACATGGAAGACAC
CCTGCACCAGCGCTTGATCGGTCAAGAAGAGGCTGTTAGAGCGGTTTCTAAGGCAATTCGCCGCGCCCGTGTCGGCTTGA
AGAATCCCAACCGTCCGATCGCTAGCTTCGTGTTCTCCGGTCCTACTGGGGTTGGTAAAACCGAGTTGACAAAATCTTTG
GCGGCTTACTTCTTCGGCTCCGAAGATGCGATGATCCGCTTGGATATGTCTGAGTACATGGAACGGCACACCGTTTCTAA
ATTAATTGGTTCGCCTCCTGGTTACGTCGGTTATAACGAAGGCGGACAGTTAACAGAAGCCGTGCGTCGTCGTCCTTATA
CCGTCGTGCTATTCGACGAAATTGAAAAAGCACACCCCGATGTCTTCAACATGCTATTGCAAATTTTGGAAGACGGGCGG
TTAACAGATGCCAAGGGACGTACAGTAGATTTCAAGAATACCTTGATCATTCTTACCTCTAACATTGGTTCTAAGGTAAT
TGAAAAAGGTGGCGGTGGAATCGGCTTTGAATTCTCCTCGGAAGATGCAGCCGAAACTCAATACAACCGCATTCGTTCCT
TGGTGAACGAAGAGTTGAAGCAATACTTCCGTCCAGAGTTCCTCAACCGCTTGGATGAAATCATCGTCTTCCGTCAGTTG
AGTAAGGCAGAGGTGAAAGAAATTGCCGATATCATGCTCAAGGAAGTCTTCGGACGCTTAACTGAGAAGGGCATTACCCT
CACAGTTACCGAACGATTCAAGGATCGCTTGGTAGAAGAAGGTTACAACCCCAGCTACGGTGCTAGACCATTACGCCGCG
CCATTATGCGTCTGTTAGAAGATAGCTTGGCAGAAGAAATTCTGTCCGGTCGCATCAAAGAAGGCGATGAGGCTGTTGTC
GATGTCGATGACACTGGTAATGTAAAAGTGCTGTCGCAGGAGCGCAAAGAATTATTGCCTCAAGCAGCCGAGTAA

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKTMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSAGSQSGRTKTP
TLDEFGSNLTQMAGEGKLDPVVGREKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLASRIANKDVPDILEEKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDETIEILFGLRDRYEQHHKLKISDAALEAAAKLSDRYISDRYLPDKAIDLIDEAGSR
VRLINSQLPPAAKELDKELRQVLKEKDDAVRTQDFDRAGELRDREMELRAEIRAIAQSKTGTTKSEGDDSPVVTEEDIAQ
IVASWTGVPVNKLTESESEKLLHMEDTLHQRLIGQEEAVRAVSKAIRRARVGLKNPNRPIASFVFSGPTGVGKTELTKSL
AAYFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGIGFEFSSEDAAETQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
SKAEVKEIADIMLKEVFGRLTEKGITLTVTERFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILSGRIKEGDEAVV
DVDDTGNVKVLSQERKELLPQAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Chro_5470 YP_007094701.1 ATPase VFG0079 Protein 0.0 60
Chro_5470 YP_007094701.1 ATPase VFG0080 Protein 1e-153 51