Gene Information

Name : Chro_3959 (Chro_3959)
Accession : YP_007093236.1
Strain : Chroococcidiopsis thermalis PCC 7203
Genome accession: NC_019695
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4469938 - 4470687 bp
Length : 750 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR005829:IPR001789:IPR001867; KEGG: ava:

DNA sequence : 
ATGGCACGAATACTTGTAATTGATGACGATCCAGCAATCTCCGAATTGGTTGCCGTGAACTTAGAAATGGCTGGCTACGA
TGTCAGTCAAGCAGAAGACGGAATTAAGGGACAGGCTCTCGCACTCCAGTTGCAGCCAGACTTAATTATGCTCGATCTGA
TGCTACCTAGAGTAGACGGCTTTACAGTTTGCCAGCGTTTGCGGCGCGACGAACGGACGGCTGAAATTCCCGTACTCATG
CTCACAGCCCTTAGCCAAACTCAAGATAAGGTTGAAGGTTTCAATGCAGGCGCAGATGACTATTTGACGAAACCATTTGA
AGTTGAAGAAATGCTAGCTCGCGTCCGTGCGTTACTTCGGCGTACCGATCGCATCCCTCAAGCAGCCAAGCATAGCGAGA
TCCTCAACTACGGTCCTCTAACTCTGGTTCCAGAGCGTTTTGAAGCTATCTGGTTTACTGAAACTGTCAAATTGACCCAC
CTAGAATTTGAGTTACTCCACTGCTTGCTTCAGCGTCACGGACAGACTGTTTCGCCTAGCGACATTCTCAAGGAAGTCTG
GGGATACGATCCTGACGATGATATTGAAACTATTCGCGTCCACATTCGCCACCTCCGAACCAAGCTAGAACCAGATCCCC
GCCACCCTCGTTATATTAAAACTGTTTATGGTGCGGGCTACTGCTTGGAACTACCTAGCGTAGAGCAAGTAGAGGAAGTA
GCTGTAGCTCACGGGAGCAGTCACGAATAA

Protein sequence : 
MARILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTVCQRLRRDERTAEIPVLM
LTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTDRIPQAAKHSEILNYGPLTLVPERFEAIWFTETVKLTH
LEFELLHCLLQRHGQTVSPSDILKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVEQVEEV
AVAHGSSHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 3e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 3e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 4e-40 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 2e-39 42
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 2e-41 42
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-31 41
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator BAC0308 Protein 1e-27 41
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator CP004022.1.gene3215. Protein 2e-25 41
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 1e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-36 43
Chro_3959 YP_007093236.1 winged helix family two component transcriptional regulator VFG0596 Protein 7e-27 41