Gene Information

Name : Chro_1320 (Chro_1320)
Accession : YP_007090715.1
Strain : Chroococcidiopsis thermalis PCC 7203
Genome accession: NC_019695
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1466095 - 1466835 bp
Length : 741 bp
Strand : -
Note : PFAM: ABC transporter; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: cyt:cce_1485 Mn(2+)/Zn(2+) family ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase;

DNA sequence : 
ATGTTAGAAGTCCAACATTTAACCGTCAGCTATCGAGGTGTATCTGCTGTTGAAGATGTCAGTTTTCGCCTGCAACCAGG
ACAAATCGTTGGCGCGATCGGTCCTAATGGTGCGGGTAAAAGCACGATGGTCAAGGCAATGTTGGGTTTAGTACCAACTG
CAAGTGGAGTGGTAAAGTATCGCGATCGCGCCTTAAAACAACAGCTGAATGCAGTAGCATACGTCCCTCAACGCACGCAA
ATTGACTGGGATTATCCCGTGACCGTGTGGAACGTTGTCATGATGGCACGAACGAGACAGACGGGATGGTGGCGCGAACC
CAATCGTCAATCTAAGCAAATTGTCGCTACTGCTATAGATCGAGTTGGGATGTGGGAACTGCGTCACAGACAAATTGGCG
AGTTATCCGGCGGACAACAGCAGCGAGTCTTCTTAGCGCGATCGCTAGCACAGGAAGCAGAATTATTCTTTTTTGACGAG
CCATTTGTTGGTATCGACAAGAAAACCGAAACAATTATGTTTGATGTATTTTCCGAATTAAAATTGCAAGGTAAAACTCT
ATTAGTTATTACCCACGATCTCGCCACAACATTAATCAAATGCGATCGGCTCTTATTATTAAATCGTCAGTTAATCGCCA
ACGGTTCTCTCAAAGAAGTCACGACAACAGCCAACATCCAACGCGCCTACGGTGACAGCATTTTGTTAATTCGGAATTCG
GAATTCGGAATTCGGAATTAG

Protein sequence : 
MLEVQHLTVSYRGVSAVEDVSFRLQPGQIVGAIGPNGAGKSTMVKAMLGLVPTASGVVKYRDRALKQQLNAVAYVPQRTQ
IDWDYPVTVWNVVMMARTRQTGWWREPNRQSKQIVATAIDRVGMWELRHRQIGELSGGQQQRVFLARSLAQEAELFFFDE
PFVGIDKKTETIMFDVFSELKLQGKTLLVITHDLATTLIKCDRLLLLNRQLIANGSLKEVTTTANIQRAYGDSILLIRNS
EFGIRN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 7e-43 43
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 9e-43 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-43 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 9e-44 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 9e-44 42
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-44 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-44 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Chro_1320 YP_007090715.1 ABC transporter BAC0400 Protein 8e-46 49
Chro_1320 YP_007090715.1 ABC transporter BAC0440 Protein 8e-47 43
Chro_1320 YP_007090715.1 ABC transporter BAC0350 Protein 2e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Chro_1320 YP_007090715.1 ABC transporter VFG0526 Protein 2e-44 42