Gene Information

Name : Oscil6304_5014 (Oscil6304_5014)
Accession : YP_007088438.1
Strain : Oscillatoria acuminata PCC 6304
Genome accession: NC_019693
Putative virulence/resistance : Resistance
Product : beta-lactamase class D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6392211 - 6393047 bp
Length : 837 bp
Strand : -
Note : PFAM: Penicillin binding protein transpeptidase domain

DNA sequence :
ATGATTGTTTCATTGGGCTGTCTAATTTTTACCATTTTTCCCAACATTAAACCGGCATCAAGTCTTTCCAAATCTGGGAG
TGAGAGTGCAGTCTTCCCAGAGATGGCTCAAACCTTTGACTTTGGTCAACATTTCCAAGAGTTAGGGGTGGAAGGTTCAA
TTATTATTGCGGAATTAAATGGCAACCTCTGGCAACATAACCCTCAACGCAATCAAACCGCCTTCCCCACCGCCTCAACC
TTCAAAATCCTCAACTCTCTCATTGCCCTAGAAACCAGCGTCATTCCGAATGAACTCGCCGTGTTAACCTGGGATGGAAT
TCCTAGAGCAATTCCCACCTGGAATCGAGACTTAAATCTGAGAGAAGCATTTAAACTCTCTGCCGTCTGGTTTTATCAAG
TGTTAGCGCGGCGCATCGGATATGAGCGAATGCAGCAATGGATAACCCAAGTCGGCTATGGCAATCAAAACATTGGCACA
CCGGAAGAAATTGACCAATTTTGGCTACAGGGAAACCTCCAAATCACCCCCCAACAACAAGTGCAATTTTTGCGCCGTCT
CTACGACAACGATTTACCCTTTTCTGAGCAGACCCTTTCCCTAGTCAAAGAGATTATGATTTATGAACAAACTCCCGACT
ACACCATTCGAGCTAAAACAGGTTGGTTTGGATTTGGCAATGAATCACTCCAAAATATTGGCTGGTTTGTGGGCTATGTA
GAAACCGGAGATAATGTTTATTTTTTTGCAACTAATATTGATATTAACAAGCCCGAAGATGGACCGGCTAGACTTGAGCT
AACTCGGCGCTGTTTGCAAGATATCGGCGTGTTGTAG

Protein sequence :
MIVSLGCLIFTIFPNIKPASSLSKSGSESAVFPEMAQTFDFGQHFQELGVEGSIIIAELNGNLWQHNPQRNQTAFPTAST
FKILNSLIALETSVIPNELAVLTWDGIPRAIPTWNRDLNLREAFKLSAVWFYQVLARRIGYERMQQWITQVGYGNQNIGT
PEEIDQFWLQGNLQITPQQQVQFLRRLYDNDLPFSEQTLSLVKEIMIYEQTPDYTIRAKTGWFGFGNESLQNIGWFVGYV
ETGDNVYFFATNIDINKPEDGPARLELTRRCLQDIGVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 2e-39 46
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 2e-39 46
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 9e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AM932669.1.gene2.p01 Protein 1e-39 46
Oscil6304_5014 YP_007088438.1 beta-lactamase class D X58272.1.gene1.p01 Protein 3e-39 46
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AY343493.1.gene1.p01 Protein 2e-36 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D U37105.2.gene2.p01 Protein 5e-38 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D U59183.1.gene3.p01 Protein 5e-38 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AM412777.1.gene1.p01 Protein 4e-38 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D NC_010410.6002874.p0 Protein 5e-38 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AY445080.1.gene1.p01 Protein 4e-38 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AF231133.1.gene3.p01 Protein 2e-36 44
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AJ854182.1.gene1.p01 Protein 1e-37 43
Oscil6304_5014 YP_007088438.1 beta-lactamase class D Z22590.1.gene1.p01 Protein 2e-37 43
Oscil6304_5014 YP_007088438.1 beta-lactamase class D HQ700343.1.gene1.p01 Protein 2e-34 42
Oscil6304_5014 YP_007088438.1 beta-lactamase class D HM015773.1.gene6.p01 Protein 1e-35 42
Oscil6304_5014 YP_007088438.1 beta-lactamase class D AY500137.1.gene1.p01 Protein 1e-35 42
Oscil6304_5014 YP_007088438.1 beta-lactamase class D JN205800.1.gene6.p01 Protein 1e-35 41
Oscil6304_5014 YP_007088438.1 beta-lactamase class D HM113558.1.gene1.p01 Protein 5e-32 41
Oscil6304_5014 YP_007088438.1 beta-lactamase class D HM113559.1.gene1.p01 Protein 9e-32 41
Oscil6304_5014 YP_007088438.1 beta-lactamase class D EU547446.1.gene1.p1 Protein 1e-31 41