Gene Information

Name : Oscil6304_1311 (Oscil6304_1311)
Accession : YP_007084944.1
Strain : Oscillatoria acuminata PCC 6304
Genome accession: NC_019693
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1602271 - 1604895 bp
Length : 2625 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
ATGCAACCCAATAATCCGAATCAGTTTACAGAAAAAGCGTGGGCGGCGATCGCCCAGACCCCGGACCTTGCCAAACAAGC
GCAACATCAGCAAATCGAAAGCGAACACCTGATGAAAGCGTTACTCGAACAAGAAGGACTCTCCAGCAGCATTCTCAGCA
AAGCGGGAGTCAACGTCCAACAAATGCGCGATCGCACCGAACAATTTATCAATCGCCAACCCAAAGTGAGTAGCATCAGT
TCCGTCTATCTCGGACGAACCGTGGATACTCTCCTCGATCGCGCCGATGCTTATCGGAAAGAGTATGCCGATGAATATAT
TTCCATCGAACATTTATTACTCGGTTTCGCCAAAGATGACCGCTTTGGTAAAGGACTCTTCCAGGAATTCAAACTCACTG
AACAAAAACTCAAAGAAACCATCTCCCAAGTTAGAGGCAATCAAAAAGTGACCGATCAAAATCCCGAAGGCAAATATCAA
TCCCTCGAAAAATATGGACGCGACCTCACTCAAGCGGCGCGAGAAGGTAAACTCGACCCCGTAATCGGTCGAGATGACGA
AATTCGCCGGACTATCCAAATTCTCTCACGCCGCACAAAGAATAACCCGGTGTTGATTGGGGAACCGGGGGTCGGTAAAA
CTGCGATCGCCGAAGGACTCGCCCAACGAATTATCGCCGGAGATGTCCCCCAATCCTTGAAAGACCGCCAATTGATTACC
CTCGATATGGGGTCATTAATTGCCGGTGCCAAATATCGCGGGGAATTTGAAGAACGCCTGAAAGCAGTCCTCAAAGAAGT
CACCGAATCCGGTGGAAATATCATCCTGTTTATCGATGAAATTCATACCGTCGTCGGGGCCGGTGCCACCCAAGGGGCAA
TGGATGCCGGGAACTTACTCAAACCTATGTTAGCACGAGGAGAACTGCGTTGTATCGGGGCCACCACCCTGGATGAGTAT
CGCAAATATCTGGAAAAAGATGCGGCATTAGAACGCCGCTTCCAGCAAGTGTATATCGACCAACCCAGCGTTGCCGATAG
TATCTCCATTTTGCGCGGACTCAAAGAACGCTATGAAGTGCATCATGGGGTAAAAATCTCCGATAGTGCCTTAGTTGCGG
CAGCGACTTTATCCAACCGTTATATCAGCGATCGCTTCCTCCCGGATAAGGCGATCGACCTCGTAGATGAAGCAGCAGCA
AAACTGAAAATGGAGATCACCTCCAAACCCGAAGAACTGGACGAAATCGACCGCAAAATCCTCCAGTTAGAAATGGAACG
GTTATCCTTGCGAAACGAAAGTGACCTTGCCTCCCAGGACCGCTTGGAACGGTTAGATAAAGAACTCGGCAACCTCAAAG
AAGAACAACATACTCTGAATGCTCAATGGGAGTCTGAAAAAGACGTAATTGCTCAAATTCAGAGTATTAAAGAAGAAATT
GATCGGGTCAACATTGAAATTCAACAAGCGGAACGCAACTATGACCTCAACCGCGCCGCAGAATTAAAATATGGCAATCT
CACCCAATTGCAAAAGCAACTGAAACAGGCGGAATCCAATTTAGCAGCAAACCAAACCAGTGGTCAAACCTTACTCCGGG
AAGAAGTAACCGAATCTGATATTGCTGAAATTATCTCTAAATGGACCGGAATTCCGATTAGTAAATTAGTGGAATCCGAG
ATGCAAAAACTGCTGCAACTCGAAGACGAATTACACAAGCGCGTCATCGGACAAGAGGAAGCAGTCACCGCCGTTGCCGA
TGCCATTCAGCGATCGCGCGCCGGATTATCCGACCCAAATCGCCCCGTTGCCAGCTTTATCTTCCTCGGACCCACCGGGG
TTGGTAAAACTGAACTCGCCAAAGCACTCGCCGCCTATCTATTCGATACCGAAGAATCAATGGTCCGAATTGATATGTCG
GAATACATGGAAAAACACGCCGTTTCCCGCTTAGTCGGTGCGCCTCCAGGATATGTCGGATATGAAGAAGGGGGACAACT
TTCCGAAGCAGTCCGCCGTCGTCCTTACTCGGTGATTCTATTCGATGAAATCGAAAAAGCGCATCCCGATGTGTTCAATA
TCATGCTACAAATTCTCGATGATGGTCGAGTGACGGATGCACAAGGACATACCGTAGACTTCAAGAACTCAGTGATTATT
ATGACCAGTAATGTCGGGTCACAATTTATCTTAGATGTTTCCGGGGAAGACGAAGAGTACGAAGAAATGCGGGGTCGGGT
GATGGAAGCGATGCGGAGTAATTTCCGTCCGGAATTCCTGAACCGAATTGATGAGATGATTATCTTCCATTCGTTGAAGA
AAGAGCAACTGCGGCAGATTGTGCAGTTGCAAGTCGAACGAGTCATAGAACGCCTGCGCGATCGCAAGATGTCGTTGAAA
CTGTCTGATAGTGCGGTGAGTTTCTTAGCGGAAGTGGGATATGACCCCGTTTATGGCGCACGTCCTCTGAAGCGTTCCAT
CCAGCGTGAGTTAGAAACGCAAATTGCTAAATCTATCTTACGCGGTGATTTTACCACTGGGGATACAATTTTCGTGGATG
TGGAAAATGAGCGGTTAGCGTTTAAGCGGTTAGCGTCTGATGTATTAGTTCAATCGGATTTGTAG

Protein sequence :
MQPNNPNQFTEKAWAAIAQTPDLAKQAQHQQIESEHLMKALLEQEGLSSSILSKAGVNVQQMRDRTEQFINRQPKVSSIS
SVYLGRTVDTLLDRADAYRKEYADEYISIEHLLLGFAKDDRFGKGLFQEFKLTEQKLKETISQVRGNQKVTDQNPEGKYQ
SLEKYGRDLTQAAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIIAGDVPQSLKDRQLIT
LDMGSLIAGAKYRGEFEERLKAVLKEVTESGGNIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDEY
RKYLEKDAALERRFQQVYIDQPSVADSISILRGLKERYEVHHGVKISDSALVAAATLSNRYISDRFLPDKAIDLVDEAAA
KLKMEITSKPEELDEIDRKILQLEMERLSLRNESDLASQDRLERLDKELGNLKEEQHTLNAQWESEKDVIAQIQSIKEEI
DRVNIEIQQAERNYDLNRAAELKYGNLTQLQKQLKQAESNLAANQTSGQTLLREEVTESDIAEIISKWTGIPISKLVESE
MQKLLQLEDELHKRVIGQEEAVTAVADAIQRSRAGLSDPNRPVASFIFLGPTGVGKTELAKALAAYLFDTEESMVRIDMS
EYMEKHAVSRLVGAPPGYVGYEEGGQLSEAVRRRPYSVILFDEIEKAHPDVFNIMLQILDDGRVTDAQGHTVDFKNSVII
MTSNVGSQFILDVSGEDEEYEEMRGRVMEAMRSNFRPEFLNRIDEMIIFHSLKKEQLRQIVQLQVERVIERLRDRKMSLK
LSDSAVSFLAEVGYDPVYGARPLKRSIQRELETQIAKSILRGDFTTGDTIFVDVENERLAFKRLASDVLVQSDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-110 42
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 7e-111 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oscil6304_1311 YP_007084944.1 ATP-dependent chaperone ClpB VFG2076 Protein 7e-124 41