Gene Information

Name : Nos7524_0246 (Nos7524_0246)
Accession : YP_007073765.1
Strain : Nostoc sp. PCC 7524
Genome accession: NC_019684
Putative virulence/resistance : Unknown
Product : site-specific recombinase XerD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 285998 - 287578 bp
Length : 1581 bp
Strand : -
Note : PFAM: Phage integrase family; Insertion element protein

DNA sequence :
ATGAATCATGACTATATTCCACAAACTCAAGAAAAAAAGACTCAACTTCAGGCAGTTAAAAAATCAACTATAAATTGTCC
TAAATGTGGCAGCATAGATTATCATAAAGCTGGCATTAATCCAACAGGAAAACAAAAATATCGTTGCAAACAATGTCAAC
ACAAGTTTGTAATAAATCCATCGGCTAGTCATATAAAAATACTAGACGATTATTGGACTGCTTCAGAATTAGGATTACAA
GTTAGCCCACACCATAATGATGGAGATAAACTAAATTTTTCCTCTATTCAACAGGAATGGCTAAAACAAGATATTAAAAG
ATTTATTAGATATATTGCTACGACAACAACTAGCTTTGAAAAGCTACAAAAATATTTGTCTTGTTTCAGGAATTTTTCAA
GATTTATATCTCAAAATAAAATAGTAAATCGAATAGAAGATATAACTCGCTCTGTAATTATCGACTACCTAGATTATCTT
AATCAAAAACATCTAGCTCCAGCAACTAAAGGTGAACGTATCTCTGCTATAGCTTCTTTATTTGAAACTGGTGTTACTAA
TAAATGGTTTAATGTAGAACCTTACTTAATTCGTAAAGAGGATTATCCTAGTCGCCCAAAATCATTACCTCGTTATATTC
CAGATGAAGTGATTCGTCAATTAAATGAACACCTAGATGCCTTACCTGAGCCAATAACAAGAATGGTGCTGGTTATTCAA
GAATGTGGTTTGAGAGTAGGAGAATTATGTCAACTACCTTTAGATTGCCTTAAGCAAGATAGTAAAGGTGGATGGTTTAT
TCAATTTATGCGTTGGAAGATGAAGTTTGAAACTACCTTGCCTATATCTATAGAGCTTGCCCAGGCTATTAAAGAGCAGC
AAGCTTACATTCAAAAACATTTTGGTAAAGACTATAAATATCTTTTCTGCGGTAGAAAAGCATCGCCAGAATTTATTCCT
GAACCTAAAGTTATGACCGACCAATCGTTTGCTAATCATTTAAAACACTTGGCAGAGGAATTTAATATTTGCGATAGCAC
GGGCAAGAGATGGAATTTTCAGACTCATCAGTTTCGCCATACTGTTGGGACAAGAATGATTAATAATGGAGTGCCACAGC
ATATTGTCCAACGATATTTAGGTCATGATTCACCTCACATGACTATGGTTTATGCTCATATTCATGATGCGACATTAAGA
AAAGAAATAGACAAATATCTTGATAATAAAGTAGTCAATATTAATGGCGAAGTTATTGAATCACTTCATCCAGAATTAGA
CAATGATAGTGGTCTGCAATGGATGAAGAAAAAAGTTTTGGCTGAAACTTTAGCAAATGGATATTGTGGACTACCCGCAC
AGCTTACCTGTAGTAAGGGCAATGCCTGCCTAACCTGCGGTGATTTTCGTACAACCATTGAGTTTTTAGACCAACATAAG
GAACATTTAGAGCGTACTAATAAAGTTCTCGAAGTAGCTAAAACTAATGGTTGGCAACGTCAAATTCAAGTTAATGAAGA
TGTTAAAAAAAATCTAGAAAATATCATCAATACTCTGGAGGGCAACAAGAATGAGCAATGA

Protein sequence :
MNHDYIPQTQEKKTQLQAVKKSTINCPKCGSIDYHKAGINPTGKQKYRCKQCQHKFVINPSASHIKILDDYWTASELGLQ
VSPHHNDGDKLNFSSIQQEWLKQDIKRFIRYIATTTTSFEKLQKYLSCFRNFSRFISQNKIVNRIEDITRSVIIDYLDYL
NQKHLAPATKGERISAIASLFETGVTNKWFNVEPYLIRKEDYPSRPKSLPRYIPDEVIRQLNEHLDALPEPITRMVLVIQ
ECGLRVGELCQLPLDCLKQDSKGGWFIQFMRWKMKFETTLPISIELAQAIKEQQAYIQKHFGKDYKYLFCGRKASPEFIP
EPKVMTDQSFANHLKHLAEEFNICDSTGKRWNFQTHQFRHTVGTRMINNGVPQHIVQRYLGHDSPHMTMVYAHIHDATLR
KEIDKYLDNKVVNINGEVIESLHPELDNDSGLQWMKKKVLAETLANGYCGLPAQLTCSKGNACLTCGDFRTTIEFLDQHK
EHLERTNKVLEVAKTNGWQRQIQVNEDVKKNLENIINTLEGNKNEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB-3 YP_190049.1 transposase B Not tested Type-II SCCmec Protein 2e-78 42
unnamed BAB47606.1 transposase B of Transposon Tn554 Not tested Type-III SCCmec Protein 3e-76 42
tnpB BAC57490.1 transposaseB Not tested Type-IIIinv SCCmec Protein 2e-77 42
tnpB BAC57471.1 transposase B Not tested Type-IIIinv SCCmec Protein 1e-77 42
tnpB BAB47666.1 transposase B(Tn554) Not tested Type-III SCCmec Protein 1e-78 42
tnpB BAC53828.1 transposase B(Tn554) Not tested SRImec-III and SCCmec-III region Protein 1e-78 42
tnpB1 YP_039525.1 transposase B 1 Not tested Type-II SCCmec Protein 2e-78 42
tnpB BAA82202.1 transposaseB Not tested Type-II SCCmec Protein 1e-78 42
tnpB NP_370579.1 transposase B Not tested Type-II SCCmec Protein 2e-78 42
tnpB NP_373291.1 transposase B for Tn554 Not tested Type-II SCCmec Protein 2e-78 42