Gene Information

Name : Lepto7376_4065 (Lepto7376_4065)
Accession : YP_007073030.1
Strain : Leptolyngbya sp. PCC 7376
Genome accession: NC_019683
Putative virulence/resistance : Resistance
Product : sigma-54 interacting domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.28
Position : 4499942 - 4500739 bp
Length : 798 bp
Strand : -
Note : PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: amr:AM1_5603 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPas

DNA sequence : 
ATGGGTTCAAAGCCATCGATCATCACGCAGATATTCGGTTGGTTGCAACCATCTGTCGGCAATTGGGAGCAATTTAAGCA
GCCATCTGAAGGTTTTATTGAATTCCGAAATCTCAGCAAAGGTTTCACTGAAGGCTTGACCGAAAGACAGGTGCTTAATA
ATTTATCGATGGCTTTCGAACAGGGACAATTTATTGTGCTGCTTGGGCAAAGTGGTAGCGGTAAGAGCACATTGCTAAAT
TTGATTAGCGGTATTGAACGACCAAGCTCTGGGACGGTGCTAATCGATGGTGTACCGATTACGGAGTTAAATGAACGCGA
TTGCACGTTATTTCGTCGGGATCAGATTGGTATTATTTTTCAGTTTTTTAATCTCATTCCAACCTTAACTGTCCTCGAAA
ATGTGACGTTGCCGCAAGAGCTGGCAGGTCGTTCCCCTGCTGATGTTGAATCTCAGGCTCTTGCTCTTCTGTCCAAAGTT
GGGTTGGGCGATCGCAGTGAAGCTTTCCCTGATAAACTCTCCGGCGGGCAACAACAACGGGTGGCGATCGCCCGCGCTTT
GGTTCATGAGCCACGTTTGATTTTGGCAGATGAACCAACAGGCAATCTCGACGAAGATACCGGCAAAACAGTTTTAGAAT
TACTCCTCGACTTGACCCGCAATGCCAATAAAACTCTGATTATGGCGACCCATAATCCCGAAATTGCAACCTATGCAGAC
AAAGTACTGCGGGTGCATGAAGGCCATCTCGAAGATGCCACAGCAGAGTTCCAACGTCGAGAGGTCGCGACTCTCTAA

Protein sequence : 
MGSKPSIITQIFGWLQPSVGNWEQFKQPSEGFIEFRNLSKGFTEGLTERQVLNNLSMAFEQGQFIVLLGQSGSGKSTLLN
LISGIERPSSGTVLIDGVPITELNERDCTLFRRDQIGIIFQFFNLIPTLTVLENVTLPQELAGRSPADVESQALALLSKV
GLGDRSEAFPDKLSGGQQQRVAIARALVHEPRLILADEPTGNLDEDTGKTVLELLLDLTRNANKTLIMATHNPEIATYAD
KVLRVHEGHLEDATAEFQRREVATL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-35 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-35 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-35 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lepto7376_4065 YP_007073030.1 sigma-54 interacting domain-containing protein CP001581.1.gene598.p Protein 5e-38 45
Lepto7376_4065 YP_007073030.1 sigma-54 interacting domain-containing protein NC_012469.1.7686878. Protein 2e-42 44
Lepto7376_4065 YP_007073030.1 sigma-54 interacting domain-containing protein CP001581.1.gene798.p Protein 6e-39 44
Lepto7376_4065 YP_007073030.1 sigma-54 interacting domain-containing protein NC_008702.1.4606598. Protein 2e-34 44