Gene Information

Name : Lepto7376_0139 (Lepto7376_0139)
Accession : YP_007069421.1
Strain : Leptolyngbya sp. PCC 7376
Genome accession: NC_019683
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 154228 - 156690 bp
Length : 2463 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit

DNA sequence :
ATGTTTGAACGCTTCACAGAAAAAGCAATTAAGGTGATTATGCTTGCCCAAGAGGAAGCGCGTCGCCTTGGCCATAACTT
CGTTGGCACGGAGCAAATCCTCCTCGGTCTCATTGGTGAGGGGACTGGTGTCGCCGCAAAGGTGCTCCGGTCTATGGGAG
TTAATCTTAAGGATGCTCGCATCGAAGTTGAAAAAATAATTGGACGGGGATCTGGCTTTGTTGCCGTAGAAATTCCTTTC
ACACCTAGAGCAAAAAGAGTTTTAGAGCTCTCCCTTGAAGAAGCCCGTCAGCTCGGCCATAATTACATCGGCACTGAGCA
CTTATTGTTAGGCCTTATTCGTGAGGGTGAAGGTGTTGCCGCTAGAGTTCTAGAGAATTTAGGGGTTGATCTTTCGAAGG
TAAGAACCCAAGTTATCCGTATGTTGGGTGAAACTGCCGAGGTCGCGGCTGGCAGTGGCGGCTCTCGTAGTAATAAGACA
CCAACCCTTGATGAGTTTGGCTCCAACCTTACTCAGTTAGCCAAAGACAGTAAACTTGATCCCGTTGTCGGTCGTCAAAA
GGAAATTGAGCGGGTTATCCAAATTCTTGGTCGTCGGACAAAGAATAATCCTGTTCTAATTGGTGAACCGGGTGTTGGTA
AAACGGCGATCGCCGAAGGTTTGGCACAGCGTATTTCTACTGGTGATGTACCAGATATTCTCGAAGAAAAGCGTGTCGTT
ACCCTTGATATTGGTCTGCTCGTTGCGGGTACAAAATATCGCGGTGAATTTGAAGAACGCCTTAAAAAGATCATGGATGA
AGTCCGCCAAGCGGGTAATGTAATCCTTGTGATTGACGAGGTTCATACCCTTATTGGCGCTGGTGCAGCAGAAGGGGCGA
TCGACGCAGCGAATATCCTCAAGCCTGCTCTCGCTCGTGGTGAACTGCAATGTATTGGTGCTACCACTCTCGATGAGTAC
CGCAAGCATATTGAGCGAGACGCGGCTCTCGAACGTCGTTTCCAGCCTGTAATGGTTGGTGAGCCTTCCGTTGAAGAAAC
CATCGAAATTCTCTTCGGTCTTCGCGAACGTTATGAGCAACACCACAAGCTTAAAATTCTTGATGAAGCTCTCGATGCGG
CAGCAAAATTGGCAGATCGTTATATCAGTGATCGCTTCCTTCCTGACAAGGCGATTGACTTGATTGATGAAGCTGGTTCT
CGCGTCCGTCTAATCAATTCTCAACTTCCTGCTGAAGCAAAAGAACTTGATAAGGAACTCCGCGGTGTCCTTAAAGAGAA
GGACGAAGCAGTTCGTTCCCAAGAGTTTGATAAAGCCGGTGAACTCCGTGATCGTGAAATGTCGATCAAGGCAGAAATTC
GGGCGATCGCCGCAAGCCAGAAAGAGAAAAAGACTGACATCGATGCCGTGGTTGACGCTGAAGAAATCGCCCATATCGTT
GCATCTTGGACAGGTGTTCCCCTCAACAAACTTACTGAGAGTGAATCCACCAAACTCCTCAATATGGAAGATACCTTGCA
CCAGCGTTTGATTGGTCAAGAGGAAGCAGTAAGAGCTGTATCCCGCGCCATCCGCCGTGCCCGTGTTGGCCTGAAGAACC
CCAACCGTCCTATTGCAAGTTTTGTTTTCTCTGGTCCTACCGGTGTTGGTAAAACTGAGCTAACCAAATCTTTAGCAGCC
TACTTCTTCGGTTCTGAAGATGCCATGATTCGCCTGGATATGTCCGAATTCATGGAGCGTCACACCGTATCCAAGTTGAT
CGGTTCTCCTCCAGGATATGTTGGCTATAACGAAGGTGGTCAATTGACTGAAGCCGTTCGTCGTCGCCCTTACACTGTCA
TTCTCTTTGATGAGATTGAGAAGGCACACCCCGATATCTTCAATATGCTTCTGCAAATCCTTGAAGATGGTCGTCTAACC
GATGCGAAAGGTCGTACCGTTGACTTCAAAAACACCCTCATTATCTTGACTTCGAACATTGGTTCTAAGGTCATTGAGAA
AGGTGGTGGTGGTCTCGGTTTTGAATTCGGTGATGATGCAGCTGAATCTCAATACAACCGCATTCGTTCTCTTGTGAATG
AGGAATTGAAACAATACTTCCGTCCTGAATTCTTGAATCGTCTTGACGAAATCATTGTCTTCCGTCAACTCACTAAGGAT
GAGGTTAAAGAGATTTCTGAAATTCTTCTCAAGGATGTTTTCCAACGTCTTACTGAACAGGAAATCGAGCTGCAAGTTAC
TGAGAAGTTCAAAGAACGTCTTGTGGAAGAAGGTTACAATCCTGCTTACGGTGCACGTCCATTACGCCGAGCAATTATGC
GTCTCTTAGAGGATGTCCTTGCTGAAGAAATTCTCTCTGGTCGTGTTAGCTCTGGCGATACGGCTCTCGTTGATATCAAC
GAAGAAGGCAAAGTTGCTGTCAGTAAAGAAGAGCGTAAACCTGAACTCGTAGAGCAAGTTTAG

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLRSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVAAGSGGSRSNKT
PTLDEFGSNLTQLAKDSKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISTGDVPDILEEKRVV
TLDIGLLVAGTKYRGEFEERLKKIMDEVRQAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY
RKHIERDAALERRFQPVMVGEPSVEETIEILFGLRERYEQHHKLKILDEALDAAAKLADRYISDRFLPDKAIDLIDEAGS
RVRLINSQLPAEAKELDKELRGVLKEKDEAVRSQEFDKAGELRDREMSIKAEIRAIAASQKEKKTDIDAVVDAEEIAHIV
ASWTGVPLNKLTESESTKLLNMEDTLHQRLIGQEEAVRAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGKTELTKSLAA
YFFGSEDAMIRLDMSEFMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVILFDEIEKAHPDIFNMLLQILEDGRLT
DAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFEFGDDAAESQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKD
EVKEISEILLKDVFQRLTEQEIELQVTEKFKERLVEEGYNPAYGARPLRRAIMRLLEDVLAEEILSGRVSSGDTALVDIN
EEGKVAVSKEERKPELVEQV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lepto7376_0139 YP_007069421.1 ATPase VFG0079 Protein 0.0 59
Lepto7376_0139 YP_007069421.1 ATPase VFG0080 Protein 1e-141 52