Gene Information

Name : Syn6312_0401 (Syn6312_0401)
Accession : YP_007060175.1
Strain : Synechococcus sp. PCC 6312
Genome accession: NC_019680
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 402481 - 403239 bp
Length : 759 bp
Strand : -
Note : PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family

DNA sequence : 
ATGCAATCCATCACCTTTCCCTCGCCCCACCATGGCGCGATCAATGAGAATGTTGTCCTGTCAGTGCGGGGCCTGGAGAT
GACCTACTATGCTGGCCGACAGGCAACCCCAGTGCTGAAGGGGATCGATCTGGACGTGAAAGCGGGGGATATTGAACTGC
TCATGGGCCCTTCCGGCTCCGGCAAAACCACTCTCCTGTCAATCATGGCTGGTATCCTCACCCCCACAGCCGGTCACGTG
CGCTTATTTGGCCAGGAAATCACCAGTCTTCCCAAACGGCAATTAGCCCAATTTCGGCTCCAAAATATTGGTTTTATCTT
TCAAGGTTTTAATTTATTTCCTGCCCTGACTGCGGCGGAGAATGTTGGGGTCGCTTTCCAACTCAAGGGAGTCCACCGTA
AACGGGCCAAACCACAGGTTAGGGAACTTTTGGAGCGGGTGGGCTTGGCAGAACGGGCGGATCACTTGCCAGAGGATTTA
TCAGGGGGACAAAAGCAACGGGTCGCCATTGCCAGAGCTTTAGCCGGCCATCCCAAGTTGATTTTGGCGGATGAACCCAC
TGCGGCCTTGGATTCCCAGAGCGGCCGACGGGTGATTGAAATTCTGGGACAATTGGCCAAACAGGATGGGTGTACGGTGG
TGATGGTGACCCACGATCCCCGCATTGTCGATATTGCGGATCGGGTGGTTTATGTGGAGGATGGGCAAATTACAACCCCA
AGTTCGTCAATCAACGGCAAAATTCATTGGGAAGGTTGA

Protein sequence : 
MQSITFPSPHHGAINENVVLSVRGLEMTYYAGRQATPVLKGIDLDVKAGDIELLMGPSGSGKTTLLSIMAGILTPTAGHV
RLFGQEITSLPKRQLAQFRLQNIGFIFQGFNLFPALTAAENVGVAFQLKGVHRKRAKPQVRELLERVGLAERADHLPEDL
SGGQKQRVAIARALAGHPKLILADEPTAALDSQSGRRVIEILGQLAKQDGCTVVMVTHDPRIVDIADRVVYVEDGQITTP
SSSINGKIHWEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-36 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_0401 YP_007060175.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 6e-44 45
Syn6312_0401 YP_007060175.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 6e-36 44
Syn6312_0401 YP_007060175.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-34 44