Gene Information

Name : Syn6312_3245 (Syn6312_3245)
Accession : YP_007062834.1
Strain : Synechococcus sp. PCC 6312
Genome accession: NC_019680
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3166252 - 3167052 bp
Length : 801 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGGGCCAGATTGTTATGCTAACGCTCACTGATGCGACCGATACTCTAGACTTAGGAAAACGCCGCCCAGCTACGATTTT
TTTAGTTGAAGATGAAGACTTGATTCGGGACACCATTGCCTTGGCCTTACAGGATGAGGGTTATGCGGTGGTGACAGCCA
GCGATGGTCGCCAGGCCTTGGATCGGATCAATAGCCAACTTTTGGATAATAACCTGGCTGCTGAAGCGGTTCTGGGGGTG
CGGGGCTTTGACTTGATCATCCTGGACTTGATGTTACCCTTCGTCAATGGCCTGGATATTTGTCGGTTTTTGCGCCGAGA
AGGCTGTAGTGTGCCTATCTTGATGCTCAGTGCCAAGGGGAGTGAAATTGATCGGGTTGTGGGCCTGGAGGTGGGGGCCG
ATGATTATCTAACCAAGCCCTTTGGGATGCGGGAGTTGATTGCTCGCTGTCGGGCCTTAATTCGGCGAGCCATCACCAGT
CAAACCACCAATGAGGAGGATGGGCCGTCCTTCAAATATGGAGAATTAACTCTCTATCCCCAAGAATGCCGGGTGATGTT
AGGGACGAAAGAAATTAGCTTATCGCCCAAGGAATACCGGATTCTCGAATTATTTATGAGCTACCCGCGCCGAGTGTGGC
CGCGCGAGCAACTCTTAGATCGGATTTGGGGCCCAGATTTTGTGGGTGATAGTAAGACCGTTGATGTTCATATTCGATGG
TTGCGAGAAAAGATCGAACCGGATGCCTCCCATCCCACCTACATCATTACAGTGCGGGGCTTTGGCTATCGGTTTGGTTA
G

Protein sequence : 
MGQIVMLTLTDATDTLDLGKRRPATIFLVEDEDLIRDTIALALQDEGYAVVTASDGRQALDRINSQLLDNNLAAEAVLGV
RGFDLIILDLMLPFVNGLDICRFLRREGCSVPILMLSAKGSEIDRVVGLEVGADDYLTKPFGMRELIARCRALIRRAITS
QTTNEEDGPSFKYGELTLYPQECRVMLGTKEISLSPKEYRILELFMSYPRRVWPREQLLDRIWGPDFVGDSKTVDVHIRW
LREKIEPDASHPTYIITVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-29 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-29 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_3245 YP_007062834.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 5e-40 44
Syn6312_3245 YP_007062834.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 3e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_3245 YP_007062834.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 1e-29 43
Syn6312_3245 YP_007062834.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 8e-30 43