Gene Information

Name : Syn6312_3242 (Syn6312_3242)
Accession : YP_007062831.1
Strain : Synechococcus sp. PCC 6312
Genome accession: NC_019680
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3163771 - 3164622 bp
Length : 852 bp
Strand : +
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGACTCTGATTTGGGATTGGTTTATTGCCCCGCTGCAATACGAGTTTATGGTTAAGGCGGTGGTGGTCAGTGCCTTAGT
TGGCCTGGTCTGTGCCGTGTTGTCCTGTTATATGACCTTAAAGGGTTGGGCCTTAATGGGAGATGCGGTGTCCCATGCCG
TCATGCCCGGTGTAGTCGTGGCCTATTTATTAAATATTCCCTTTGCCATTGGTGCGTTTATCTTTGGTTTAATGGCTGTT
TTATCCATTGGTTTTATTAAAGCTCATACCCGCGTCAAGGAAGATACGGTCATTGGTTTAGTCTTTACGGGATTCTTTGC
CCTTGGCCTGGTCTTGGTTTCTAAAAGTCCCAGTAATATTGATTTACAACATATTCTTTTTGGCAATGTGTTGGGGATAT
CTCAAGCTGACATTATCCAAACGGCTGTTGTGAGTGCAATCACCTTAATGGTCATTCTCTGTCTCCGAAAAGACCTACTT
CTCTTTTGCTTTGATCCGATTCATGCTCAATCCATTGGTCTGAATATTACGGCTCTTTACTACACATTTTTAATCCTACT
CTCTCTCACGATTGTCGCTGCTCTGCAAACTGTAGGGATTATCCTAGTCGTTGCCATGTTAGTCACCCCTGGAGCCATTG
GCTATCTCCTCTCGGATCGCTTTGATCAGATGGTGTGGATTGCAGCCGGATCGGGGGTTTTATCCAGTGTGGCCGGAACC
TATATTAGTTATCATCTAGATGCATCAACCGGGGGATGTATTGTTGTCTTTCAAACCCTTTTATTTGTCCTGACCATGGT
ACTGGCTCCTAAATATGGGCTGATCGTGCAAAGATTCAAGTCTAGTAACTAA

Protein sequence : 
MTLIWDWFIAPLQYEFMVKAVVVSALVGLVCAVLSCYMTLKGWALMGDAVSHAVMPGVVVAYLLNIPFAIGAFIFGLMAV
LSIGFIKAHTRVKEDTVIGLVFTGFFALGLVLVSKSPSNIDLQHILFGNVLGISQADIIQTAVVSAITLMVILCLRKDLL
LFCFDPIHAQSIGLNITALYYTFLILLSLTIVAALQTVGIILVVAMLVTPGAIGYLLSDRFDQMVWIAAGSGVLSSVAGT
YISYHLDASTGGCIVVFQTLLFVLTMVLAPKYGLIVQRFKSSN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-59 49
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-59 49
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-59 49
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-59 49
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-59 49
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-54 49
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-54 49
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-54 49
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-54 49
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-54 49
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-48 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-48 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_3242 YP_007062831.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 4e-58 51
Syn6312_3242 YP_007062831.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 3e-65 51
Syn6312_3242 YP_007062831.1 Mn2+/Zn2+ ABC transporter permease BAC0351 Protein 2e-59 49
Syn6312_3242 YP_007062831.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 7e-55 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_3242 YP_007062831.1 Mn2+/Zn2+ ABC transporter permease VFG0527 Protein 1e-59 49
Syn6312_3242 YP_007062831.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 6e-55 49