Gene Information

Name : Syn6312_3240 (Syn6312_3240)
Accession : YP_007062829.1
Strain : Synechococcus sp. PCC 6312
Genome accession: NC_019680
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter substrate-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3161978 - 3162964 bp
Length : 987 bp
Strand : +
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
ATGTACGGATCAAAGCTAGGTCAGGTTTTGGGTCTGGGCCTGGTGGCATTGCTTTGGAGTCCCCTGTTAGCCGGTTGTCA
AGCCCTATTACCGGAGCAATCACCAACCGCTGGGACATCTGCTTCTCCCGGTCTGGCTGACAGCAAAAAAGTTATTTTGA
CCACTTTTACGGTCTTAGCCGATATGGCCCAAAACGTTGCAGGAGATAAAGCGGTTGTTGAATCCCTCACAAAACCGGGG
ACACAGATTCACACCTATGAACCTACTCCGAGCGACATGATTCGGGCTCAACAGGCAGATTTAATTCTGGACAATGGCCT
GGGCCTGGAACGTTGGGCCCAAAAGTTTTACGGCAATCTCCAGGGTGTCCCCCACATTACGATTAGTCAGGGTGTAGAAA
TCATTCCTCTGACTGAAGGTGTCTATGCCAATCAACCCAATCCCCATGCCTGGATGTCGCCCCAAAATGCCTTGATCTAT
GTCGAGAACATTCGCCAGGCCCTCGTGGATCTTGACCCCAATCATGCCCCCACCTACAACCAAAACGCCGCCACCTACAG
TCAGAAAATCAAGGCTTTGGATAAAAAACTCTGGGTAGCCCTGGCCCAACTGGCCCCCAATCAACGCACCTTAGTCACCT
GTGAAGGCGCATTTTCCTACCTGACGCGAGATTATGGGTTACAGGAGCTTTATCTCTGGCCAGTTAACTCCGATCAAGAC
GGTACACCCCAACAAATTCGCCAAGTCGTGGATGCGGTGCGAGCCAACAAGATCCCCGTTGTGTTTTGTGAAAGTACGGT
CAACGACAAAGCCCAGCACCAAGTTGCCCAGGAAACCAACAGCAAATTTGGGGGTGTTTTTTATGTAGATTCCCTCACGG
ACAGCAATGGGCCAGCCCCAACCTATTTGGACTTACTGACCACCAACCTGAAAACCATTCAAAAAGGCTTTCAAGTTTCC
CCTCAACCACCAGGAGCTAAACCATGA

Protein sequence : 
MYGSKLGQVLGLGLVALLWSPLLAGCQALLPEQSPTAGTSASPGLADSKKVILTTFTVLADMAQNVAGDKAVVESLTKPG
TQIHTYEPTPSDMIRAQQADLILDNGLGLERWAQKFYGNLQGVPHITISQGVEIIPLTEGVYANQPNPHAWMSPQNALIY
VENIRQALVDLDPNHAPTYNQNAATYSQKIKALDKKLWVALAQLAPNQRTLVTCEGAFSYLTRDYGLQELYLWPVNSDQD
GTPQQIRQVVDAVRANKIPVVFCESTVNDKAQHQVAQETNSKFGGVFYVDSLTDSNGPAPTYLDLLTTNLKTIQKGFQVS
PQPPGAKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-79 56
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-79 56
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-79 56
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-79 56
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-79 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_3240 YP_007062829.1 metal ion ABC transporter substrate-binding protein BAC0349 Protein 2e-79 56
Syn6312_3240 YP_007062829.1 metal ion ABC transporter substrate-binding protein BAC0439 Protein 3e-82 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syn6312_3240 YP_007062829.1 metal ion ABC transporter substrate-binding protein VFG0525 Protein 2e-79 56