Gene Information

Name : Riv7116_0912 (Riv7116_0912)
Accession : YP_007054036.1
Strain : Rivularia sp. PCC 7116
Genome accession: NC_019678
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1167379 - 1168056 bp
Length : 678 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGCCAGCGCACATTTTATTGGTAGAAGACGAAGCTAAACTCGCTAAATTTGTTGAATTAGAATTAGGTTTTGAAGGTTA
TCAAGTCAGCGTTGCCAATGACGGATTAACTGGATTAACTATGGCACGCGAGTCAAGTCCCGATTTAATCCTTTTAGATT
GGATGCTGCCAGGAATGACTGGTTTAGAAATTTGTCGCAGATTGCGAAGCACGGGGGATAAGGTACCGATTATTTTGATG
ACTGCCAAAGATGAAGTTAGCGATCGCGTTGCTGGTTTGGATGCAGGCGCGGATGATTATGTAGTTAAACCGTTCAGTGT
AGAAGAATTATTGGCGAGGGTACGGGCACGCATTCGCAGGACTTCCGATGAAAGTAGCGAAGATAATTTAGAATTTGAAG
ATTTAAAATTAAACCGCAGTACTCGGGAAGTTTACCGAAACGGACGCTTAATTGAATTGACGGCTAAAGAATTCGATTTA
CTGGAATATTTACTTTCCCATCCCCGACAAGTTATTACAAGAGACAGAATTCTCGAAGAAGTCTGGGGTTACGATTTTAT
GGGAGATTCCAACATTATTGAAGTTTACGTGCGTTATTTGCGGTTGAAGTTAGAAGCGAATAAGGAAAAGCGATTGATTC
AAACGGTTAGGGGTGTTGGGTATGTTTTGCGAGAGTAA

Protein sequence :
MPAHILLVEDEAKLAKFVELELGFEGYQVSVANDGLTGLTMARESSPDLILLDWMLPGMTGLEICRRLRSTGDKVPIILM
TAKDEVSDRVAGLDAGADDYVVKPFSVEELLARVRARIRRTSDESSEDNLEFEDLKLNRSTREVYRNGRLIELTAKEFDL
LEYLLSHPRQVITRDRILEEVWGYDFMGDSNIIEVYVRYLRLKLEANKEKRLIQTVRGVGYVLRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-35 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-34 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 1e-45 50
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 7e-49 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 1e-40 49
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 2e-46 48
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 5e-38 45
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 2e-41 45
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 3e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-39 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 3e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 3e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 4e-44 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 1e-38 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3671. Protein 5e-36 44
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 5e-46 43
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002516.2.879194.p Protein 6e-28 43
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 9e-40 43
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-35 43
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-35 42
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 1e-34 42
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 9e-42 42
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 5e-34 42
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001485.1.gene721.p Protein 6e-32 41
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 5e-57 56
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-35 46
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 5e-49 45
Riv7116_0912 YP_007054036.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 3e-41 45