Gene Information

Name : Riv7116_3009 (Riv7116_3009)
Accession : YP_007056037.1
Strain : Rivularia sp. PCC 7116
Genome accession: NC_019678
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter substrate-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3718252 - 3719256 bp
Length : 1005 bp
Strand : -
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
ATGGCTATACTTTTTAGTAAGCAGCCTTATGCAGGAAGACTGGCGATTACCTTCGGTACAGCGAAGCTTCTCACCTCGAT
AGGAATAGTGTGTGGACTGTTACTGAGTGGGTGTAGCCCGAGTACGGATGTGCCTGAAAACACAGCCCAAGAGGTTGGTA
ATACTGCACAAAATCCGAACACGAAAGATAAAAAGGTGATTCTGACAACCTTTACGGTGCTTGCTGATATGGCTCGTAAC
GTTGCAGGAGATAAAGCGATTATTCAATCCTTGACTAAACCGGGAGCAGAGATTCACGGTTACGAGCCGACTCCTAGCGA
TATAGTCAAAGCCCAAGATGCAGACTTAATTTTAGATAATGGTTTAGGTTTAGAGCGCTGGGCGCAAAAGTTTTATGGAA
ATCTCAAAGACGTGCCTCATGTTACCTTGAGTGAAGGTATTGCACCAATAGATATTAGCGAAGACGCTTACGCGGGAAAA
CCGAATCCCCATGCTTGGATGTCACCGAAACTGGCTTTAAAGTATGTGGAAAACATTCGTGATGCTTTGGTGAATTTAGA
TCCAGCGAATGCACAGACTTACACTGCTAATGCTCAAACTTATAGCGAACAAATAAAACAAATCGATAAAAAATTACAAA
ACACAGTTAAAGAAATACCTGCAAATAAACGTTTTATGGTGACTTGTGAAGGAGCATTTTCTTATCTAGCGAAAGATTAT
GGATTAAAGGAAGAGTATTTGTGGGCTGTTAATGCTGAAAAACAAGCAACTCCACAACAAGTAAAAAAAGTAATTAATAC
AGTGCGGGAAAACCAAGTTCCTGTAGTATTTTGTGAAAGTACCGTTAATGCAGATGCTCAAAAACAAGTAGCAAAAGAAA
GCAATGCCGAATTTGGCGGAGTATTTTATGTCGATTCACTTACCGATGTAAATGGCGTTGCACCTACTTATTTTAAGTTG
TTAGAGTACAACATTAACACCTTAGTTAATGGTTTGAAACAGTAA

Protein sequence : 
MAILFSKQPYAGRLAITFGTAKLLTSIGIVCGLLLSGCSPSTDVPENTAQEVGNTAQNPNTKDKKVILTTFTVLADMARN
VAGDKAIIQSLTKPGAEIHGYEPTPSDIVKAQDADLILDNGLGLERWAQKFYGNLKDVPHVTLSEGIAPIDISEDAYAGK
PNPHAWMSPKLALKYVENIRDALVNLDPANAQTYTANAQTYSEQIKQIDKKLQNTVKEIPANKRFMVTCEGAFSYLAKDY
GLKEEYLWAVNAEKQATPQQVKKVINTVRENQVPVVFCESTVNADAQKQVAKESNAEFGGVFYVDSLTDVNGVAPTYFKL
LEYNINTLVNGLKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 8e-73 56
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 8e-73 56
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 8e-73 56
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-73 56
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-72 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_3009 YP_007056037.1 metal ion ABC transporter substrate-binding protein BAC0439 Protein 2e-74 56
Riv7116_3009 YP_007056037.1 metal ion ABC transporter substrate-binding protein BAC0349 Protein 4e-73 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_3009 YP_007056037.1 metal ion ABC transporter substrate-binding protein VFG0525 Protein 4e-73 56