Gene Information

Name : Riv7116_3007 (Riv7116_3007)
Accession : YP_007056035.1
Strain : Rivularia sp. PCC 7116
Genome accession: NC_019678
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3716454 - 3717311 bp
Length : 858 bp
Strand : -
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGAGTATAGAAGCAATTTGGCAGTGGTTTGCAGCGCCATTGCAGTTTGAATTTATGGTTAAGGCAATATTTGTAAGTGC
CTTAGTAGGTGTTGTTTGTTCGGTTCTGTCATGTTATATGACTCTAAAGGGATGGGCATTAATGGGAGATGCGGTATCTC
ATGCAGTTCTCCCTGGAGTTGTACTTGCTTATATTTTAAATATTCCCTTTGCCATTGGAGCATTTGTTTTTGGCTTGGGT
TCAGTAATTTCTATCGGATTTATTAAATCCAATACTAGAATCAAAGAAGATACCGTAATGGGGTTAGTATTTACAGGCTT
TTTCGCCTTTGGTTTGGTATTAATTTCTAAAACCCCAAGTAGTATCGATTTAATGCATATCCTGTTTGGAAATGTCTTAG
GTATTTCAGACCAAAATTTAATTCAAACAATCATCATTAGCGTAGTTACCATGATATTTTTAATGGTACTGCGGAAAGAT
TTACTACTATTTTGTTTTGATGCAACCCATGCTCGTACTATAGGATTGAATACCACTGCTTTATACTATATTTTGTTATC
TGTATTAGCTTTAACTATTGTCGCCGCGCAACAAACAGTAGGAATTATTTTAGTAATTGCAATGTTAGTCACTCCAGGCG
CAACTGCTTATATGTTGAGCGATGATTTTAATCAAATGACATTAATTGCTGTGGCATCCGGAATATTTTCTAGCGTGATG
GGGACTTATATTAGCTATCATCTTGATGCTGCTACAGGTGGATGTATTGTAGTATTGCAAACTCTGTTGTTTGTTATCGC
GATGATTTTTGCACCCAAACATGGATTGTTGGTAAGAACAATTAGAGCTACGAAATAA

Protein sequence : 
MSIEAIWQWFAAPLQFEFMVKAIFVSALVGVVCSVLSCYMTLKGWALMGDAVSHAVLPGVVLAYILNIPFAIGAFVFGLG
SVISIGFIKSNTRIKEDTVMGLVFTGFFAFGLVLISKTPSSIDLMHILFGNVLGISDQNLIQTIIISVVTMIFLMVLRKD
LLLFCFDATHARTIGLNTTALYYILLSVLALTIVAAQQTVGIILVIAMLVTPGATAYMLSDDFNQMTLIAVASGIFSSVM
GTYISYHLDAATGGCIVVLQTLLFVIAMIFAPKHGLLVRTIRATK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-54 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 9e-55 50
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-54 49
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-54 49
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-54 49
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-60 48
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-60 48
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-60 48
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-60 48
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-60 48
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-48 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-48 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_3007 YP_007056035.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 3e-68 52
Riv7116_3007 YP_007056035.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 6e-55 50
Riv7116_3007 YP_007056035.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 4e-57 50
Riv7116_3007 YP_007056035.1 Mn2+/Zn2+ ABC transporter permease BAC0351 Protein 8e-61 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_3007 YP_007056035.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 5e-55 50
Riv7116_3007 YP_007056035.1 Mn2+/Zn2+ ABC transporter permease VFG0527 Protein 7e-61 48