Gene Information

Name : Riv7116_1168 (Riv7116_1168)
Accession : YP_007054286.1
Strain : Rivularia sp. PCC 7116
Genome accession: NC_019678
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1477598 - 1478350 bp
Length : 753 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGTATACCAACGAATCCACTAAGTATGCTCACGCGGCTGATATCGGACAAAAGAGTCGTGTTTTGGTAGTAGAGGATGA
AGAATTAATTAGGGAAATGCTGGTTTTGGCTTTGGAAGGAGAAGGTTATGAAGTCGAAACTGCTACTGATGGGCGTTTAG
CTGTAGAGCAACTCCAAAATTTTGACGCTAATAACAATGAGGCTGTTTTTGATTTAGTTATTTTGGATTTGATGTTGCCT
CAAATTAATGGGTTAGATATTTGTAGATTAGTGCGTCATCAAGGAAATCCGGTACCGATCTTAATGTTGAGCGCTAAAGG
CAGCGAAACGGATCGCGTTTTAGGTTTAGAGGTGGGAGCAGATGACTACTTAAGCAAGCCCTTTAGTATGAGGGAGTTGG
TAGCACGCTGTAGAGCTTTGTTGCGTCGTCAGCGTTTAATTACTACTACCGAACCTCCAGTCTTAAATTACAAAGAAATT
ACTTTATATCCTCAAGAATGTCGTGTATTAGTTCGCGGAGAGGAAGTAAATTTATCGCCGAAAGAATTTCGCCTGCTAGA
ATTATTTATGAGCTACACTCGTCGCGTATGGTCGCGAGAGCAGCTGCTCGATCAGGTATGGGGTCCCGATTTTGTTGGAG
ATAGCAAAACTGTAGATGTTCATATCCGGTGGTTGCGAGAAAAACTAGAGCAGGAGCCTTCCCGTCCCGAATATATTGTT
ACAGTTCGAGGTTTCGGGTATCGCTTTGGATGA

Protein sequence :
MYTNESTKYAHAADIGQKSRVLVVEDEELIREMLVLALEGEGYEVETATDGRLAVEQLQNFDANNNEAVFDLVILDLMLP
QINGLDICRLVRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLSKPFSMRELVARCRALLRRQRLITTTEPPVLNYKEI
TLYPQECRVLVRGEEVNLSPKEFRLLELFMSYTRRVWSREQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQEPSRPEYIV
TVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-30 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 1e-35 48
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 9e-36 48
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 2e-38 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 8e-36 47
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 2e-42 46
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 4e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 3e-33 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 2e-29 41
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene5135. Protein 3e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 8e-34 42
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 1e-30 42
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 1e-30 42
Riv7116_1168 YP_007054286.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 5e-23 42