Gene Information

Name : Cyagr_0380 (Cyagr_0380)
Accession : YP_007044915.1
Strain : Cyanobium gracile PCC 6307
Genome accession: NC_019675
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 400321 - 401193 bp
Length : 873 bp
Strand : -
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGACGGCCGTGCTCACCTGGCTGATCGAACCGCTCCAGCAGGAGTTCATGGTGCGGGCCCTGCTGGTCAGCATGCTGGT
GTCGTGCGTCTGCGGCCTGCTCTCCTGCTACATGACGCTCAAGGGCTGGGCCCTGATGGGTGATGCGGTGTCCCATGCGG
TGATGCCGGGCGTGGTGATCGCCTACGCCCTGAACCTGCCCTTCGCGGTGGGGGCTTTCGTGTTCGGCGTCGGCTCGGTG
GCCCTGATCGGCTACATCAAGCAGATGACCCGGATCAAGGAGGACACGGTGATCGGGCTGGTGTTCACCGGCTTCTTCGC
CCTCGGCCTGACGCTGATCTCCAAGGTGCGCAGCAGCATCGACCTCTCCCACATCCTGTTCGGCAACGTGCTGGGCATCA
GCTCCTCCGACATCCTCCAGACGGTGGTGATCAGCGTGCTGGTGCTCACCGTGCTGCTGGTGCTGCGCAAGGACCTGATC
CTGTTCTGCTTCGATCCCACCCACGCCCGCTCGATCGGCCTCCACACCGGCGTGCTGCACTACCTGCTGCTGTCGATGCT
GTCGCTGGCGGCGGTGGCCGGCCTGCAGACGGTGGGGATCATCCTGGTGGTGGCGATGCTGGTCACGCCGGGGGCCACGG
CCTACCTGCTCACCGATCGCTTCGACCGCATGGTGTGGCTCTCGATCCTGTCGGCGGTGATCTCCAGCGTGGCCGGGATC
TACTGGAGCTACTGGATGGATGCCTCCACCGCCGGCTGCATCGTGCTGGTGCAGACGCTGCTGTTCCTGCTCTGCTTTCT
GCTGGCGCCGCGCCATGGCCTGCTGGCCCAGCGGCGCCGTTCGCCGCGGGCCTCCCGTTTCCCCTCCGCGTGA

Protein sequence : 
MTAVLTWLIEPLQQEFMVRALLVSMLVSCVCGLLSCYMTLKGWALMGDAVSHAVMPGVVIAYALNLPFAVGAFVFGVGSV
ALIGYIKQMTRIKEDTVIGLVFTGFFALGLTLISKVRSSIDLSHILFGNVLGISSSDILQTVVISVLVLTVLLVLRKDLI
LFCFDPTHARSIGLHTGVLHYLLLSMLSLAAVAGLQTVGIILVVAMLVTPGATAYLLTDRFDRMVWLSILSAVISSVAGI
YWSYWMDASTAGCIVLVQTLLFLLCFLLAPRHGLLAQRRRSPRASRFPSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-41 50
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-41 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-41 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-40 49
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-40 49
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-40 48
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-40 48
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-40 48
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-40 48
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-40 48
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-31 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyagr_0380 YP_007044915.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 3e-41 50
Cyagr_0380 YP_007044915.1 Mn2+/Zn2+ ABC transporter permease BAC0351 Protein 7e-41 48
Cyagr_0380 YP_007044915.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 7e-41 48
Cyagr_0380 YP_007044915.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 3e-44 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyagr_0380 YP_007044915.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 3e-41 50
Cyagr_0380 YP_007044915.1 Mn2+/Zn2+ ABC transporter permease VFG0527 Protein 6e-41 48