Gene Information

Name : Cyagr_0108 (Cyagr_0108)
Accession : YP_007044668.1
Strain : Cyanobium gracile PCC 6307
Genome accession: NC_019675
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 98952 - 101585 bp
Length : 2634 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
ATGCATCCCACCGCCGAACTGTTCACCGAAAAGGCCTGGGGCGCCGTGGTCGCCTCCCAGCAGCTGGCCCAGCAGCGGCG
CCAGCAGCAGATGGACAGCGAGCACCTCTTCGCCGCCCTGCTGGCCCAGCAGGACCTGGCCAGCCGGATCCTGGAGAAGG
CCGGTGTGGATCTAGGGGCGCTGAGCCAGAAGCTGGAGGCCTTCATCGCTGCCCAGCCCAGCCTGGCCACCGCCCCCGAC
AACGTCTACCTGGGCAAGGGGCTCAATGCGGTGCTGGACCGGGCGGAGGCCCTGAAGAAGGAGTTCGAGGACAGCTACAT
CGCCGTGGAGCACCTGGTGCTGGCCCTGGCCGGCGATGACCGCTGCGGCCGCCAGCTGCTGTCCCAGTCGGGCGCCGACG
AGCGCAAGCTGCGCGAGGCTGTGATGGCCGTGCGGGGCAGCCAACGCGTGACCGACCAGAACCCGGAGGGCACCTATGAA
TCCCTCGAGAAGTACGGCCGCGATCTCACCGCCGCCGCCCGCGAGGGCAAGCTCGATCCGGTGATCGGCCGCGACGAGGA
GATCCGCCGCACCGTGCAGATCCTCTCGCGCCGCACCAAGAACAACCCGGTGCTGATCGGCGAACCCGGCGTCGGCAAGA
CGGCGATCGTCGAGGGGCTGGCCCAGCGGATCGTCAACGGTGACGTGCCCACGGCCCTGCAGAACCGCCAGCTGATCGCC
CTCGACATGGGCGCCCTGATCGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCCTCAAGGCCGTGCTCAAGGAGGT
CACCTCCAGCGAGGGGCAGATCGTCCTGTTCATCGACGAGATCCACACCGTGGTGGGGGCCGGCGCCACCGGCGGGGCCA
TGGATGCCAGCAACCTGCTCAAACCGATGCTGGCCCGCGGTGAGCTGCGCTGCATCGGCGCCACCACCCTCGATGAGCAC
CGCCAGCACATCGAGAAGGACCCGGCCCTGGAGCGCCGCTTCCAGCAGGTGTTCGTCGACCAGCCGACGGTGGAGGACAC
GATCTCGATCCTGCGGGGCCTGAAGGAGCGCTACGAGGTGCACCACGGCGTCCGCATCGCCGACAACGCCCTGGTGGCAG
CGGCCGTGCTGAGCAGCCGCTACATCGCCGATCGCTTCCTGCCCGACAAGGCCATCGACCTGATGGACGAATCGGCGGCC
CGCCTGAAGATGGAGATCACCTCCAAGCCGGAGGAGATCGACGAGCTCGATCGCCGCATCCTGCAGCTGGAGATGGAGAA
GCTCTCCCTGGGGCGCGAGTCGGACCCCGCCAGCCGCGACCGGCTCGAGAAGCTGGAGAAGGAGCTGGCCGACCTGGCCG
AGCAGCAGAGCAGCCTCAACGCCCAGTGGCAGAAAGAGAAGGGCTCGATCGACGAACTCTCCGCCATCAAGGAGGAGATC
GAGCAGGTGCAGCTGCAGGTGGAGCAGGCCAAGCGCAACTACGACCTCAACAAGGCCGCCGAGCTGGAATACGGCACCCT
GGCGGAGCTCAACAAGAAGCTGGCCGCCAAGGAGGCCGAGCTGAGCGCCCACGCCGGCGAGAAGAACCTGCTGCGCGAGG
AGGTCACCGAGGACGACATCGCCGAGGTGATCGCCAAGTGGACGGGGATTCCGGTCAGCAAGCTGGTGCAGTCGGAGATG
GAGAAACTGCTGCATCTCGAGGATGAGCTGCACACCCGGGTGATCGGCCAGGAGCAGGCCGTGACGGCGGTGGCCGATGC
GATCCAGCGGTCGCGGGCCGGCCTGTCCGACCCCAACCGCCCGATCGCCAGCTTCCTGTTCCTCGGCCCCACCGGCGTGG
GCAAGACCGAGCTCTCCAAGGCGCTGGCGTCCCAGCTGTTCGACAGCGAGGAGGCGATGGTGCGCATCGACATGAGCGAA
TACATGGAGAAGCACGCCGTCAGCCGGCTGATCGGAGCCCCTCCCGGCTACGTGGGCTACGAGGAGGGCGGCCAGCTCAC
CGAAGCGGTGCGGCGCCGTCCCTACGCCGTGATCCTGTTCGATGAGGTGGAGAAGGCCCACCCCGATGTGTTCAACGTGA
TGCTGCAGATCCTCGATGACGGCCGCGTCACCGATGGCCAGGGCCGCACGGTGGATTTCACCAACACGGTGCTGATCCTC
ACCAGCAACATCGGCAGCGCCTCGATCCTCGATCTGGCCGGCGATCCTGCCCGTCACGGCGAGATGGAGAAGCGGGTGAA
CGAGGCCCTGCGGGGCCACTTCCGCCCCGAGTTCCTCAACCGGCTGGATGAGTCGATCATCTTCCACAGCCTCAAGGCCG
AGGAACTGCGCCAGATCGTTGAGCTGCAGGTGCAGCGCCTGGCCCGGCGGCTCGAGGAGCGAAAGCTGGCCCTGCAGGTG
GATGGCGAGGCCCTCGACTGGCTGGCCGCCGTCGGCTACGACCCGGTGTATGGTGCTCGGCCCCTGAAGCGGGCGATCCA
GCGGGAACTGGAAACGCCGATCGCCAAGGCGATCCTGGCGGGCACCTTCCCCGCCGGCAGCACCATCGCGGTGGATGTGG
AGCTGGAGCGGCTGCGCTTCCGCCAGGCCGAACCGGCCGAGAACCAGGCGGTGGCGCCGGCAATGGTGGGATGA

Protein sequence :
MHPTAELFTEKAWGAVVASQQLAQQRRQQQMDSEHLFAALLAQQDLASRILEKAGVDLGALSQKLEAFIAAQPSLATAPD
NVYLGKGLNAVLDRAEALKKEFEDSYIAVEHLVLALAGDDRCGRQLLSQSGADERKLREAVMAVRGSQRVTDQNPEGTYE
SLEKYGRDLTAAAREGKLDPVIGRDEEIRRTVQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPTALQNRQLIA
LDMGALIAGAKYRGEFEERLKAVLKEVTSSEGQIVLFIDEIHTVVGAGATGGAMDASNLLKPMLARGELRCIGATTLDEH
RQHIEKDPALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRIADNALVAAAVLSSRYIADRFLPDKAIDLMDESAA
RLKMEITSKPEEIDELDRRILQLEMEKLSLGRESDPASRDRLEKLEKELADLAEQQSSLNAQWQKEKGSIDELSAIKEEI
EQVQLQVEQAKRNYDLNKAAELEYGTLAELNKKLAAKEAELSAHAGEKNLLREEVTEDDIAEVIAKWTGIPVSKLVQSEM
EKLLHLEDELHTRVIGQEQAVTAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALASQLFDSEEAMVRIDMSE
YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYAVILFDEVEKAHPDVFNVMLQILDDGRVTDGQGRTVDFTNTVLIL
TSNIGSASILDLAGDPARHGEMEKRVNEALRGHFRPEFLNRLDESIIFHSLKAEELRQIVELQVQRLARRLEERKLALQV
DGEALDWLAAVGYDPVYGARPLKRAIQRELETPIAKAILAGTFPAGSTIAVDVELERLRFRQAEPAENQAVAPAMVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 8e-98 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyagr_0108 YP_007044668.1 ATP-dependent chaperone ClpB VFG2084 Protein 2e-106 45