Gene Information

Name : PputUW4_00882 (PputUW4_00882)
Accession : YP_007027894.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1043204 - 1043923 bp
Length : 720 bp
Strand : -
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGGAACAAACCAAACGCGTCCTCGTGGTCGAGGACGACCAGCACATCGCCGACCTGATCTGCCTGCATCTTCGCGATGA
GCAGTTCGAGGTGGTGCACTGCGCCGATGGCGATGAAGGCATGCGCCTGCTGCAGCAAGGCAACTGGGACGCACTGGTCC
TCGACCTGATGCTGCCCGGTGTCGACGGCCTGGAAATCTGCCGCCGCGCCCGGGCCATGGCGCGCTACACGCCGATCATC
ATCACCAGCGCGCGCTCCAGCGAAGTGCACCGGATTCTCGGCCTGGAGCTGGGCGCCGACGACTATCTGGCCAAGCCCTT
TTCCATGCTCGAACTGGTGGCCCGGGTCAAGGCGCTGCTGCGCCGGGTCGATGCCATGGCGCGCAACCTGAAGATGGACG
CCGGCAGCCTGCTCACCGACGGCCTGGCAATCGACCCGATCACCCGCGAGGTGGCCCTCGACGGACGACGCCTGGACCTC
ACGCCCCGGGAATTCGACTTGCTGTACTTCTTCGCCCGCCAGCCCGGCAAGGTGTTTTCGCGCATGGACCTGCTCAACGC
CGTGTGGGGCTATAGCCACGAAGGCTACGAGCACACGGTCAACACCCACATCAACCGCCTGCGCGCCAAGATCGAGGCCG
ATCCGGCGCAACCTGTACGCATCCTCACTGTCTGGGGCCGCGGCTACAAATTCGCCACCGGGGAGGAGCCGCAGCCATGA

Protein sequence : 
MEQTKRVLVVEDDQHIADLICLHLRDEQFEVVHCADGDEGMRLLQQGNWDALVLDLMLPGVDGLEICRRARAMARYTPII
ITSARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVDAMARNLKMDAGSLLTDGLAIDPITREVALDGRRLDL
TPREFDLLYFFARQPGKVFSRMDLLNAVWGYSHEGYEHTVNTHINRLRAKIEADPAQPVRILTVWGRGYKFATGEEPQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-70 60
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-69 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_00882 YP_007027894.1 two component transcriptional regulator HE999704.1.gene2815. Protein 5e-42 45
PputUW4_00882 YP_007027894.1 two component transcriptional regulator NC_012469.1.7685629. Protein 1e-40 43
PputUW4_00882 YP_007027894.1 two component transcriptional regulator AF155139.2.orf0.gene Protein 2e-42 42
PputUW4_00882 YP_007027894.1 two component transcriptional regulator NC_012469.1.7686381. Protein 1e-40 42
PputUW4_00882 YP_007027894.1 two component transcriptional regulator HE999704.1.gene1528. Protein 2e-32 41
PputUW4_00882 YP_007027894.1 two component transcriptional regulator FJ349556.1.orf0.gene Protein 2e-38 41
PputUW4_00882 YP_007027894.1 two component transcriptional regulator AE016830.1.gene1681. Protein 2e-42 41
PputUW4_00882 YP_007027894.1 two component transcriptional regulator AE000516.2.gene3505. Protein 4e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_00882 YP_007027894.1 two component transcriptional regulator VFG1563 Protein 5e-70 60
PputUW4_00882 YP_007027894.1 two component transcriptional regulator VFG1702 Protein 5e-70 60
PputUW4_00882 YP_007027894.1 two component transcriptional regulator VFG1389 Protein 8e-29 43