Gene Information

Name : PputUW4_00675 (PputUW4_00675)
Accession : YP_007027687.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 807916 - 809172 bp
Length : 1257 bp
Strand : -
Note : [L] COG0582 Integrase

DNA sequence : 
ATGTGCGCTCAAACTGCCCGCCTCTCGGACCGTCAGCTCAAGGCGGTCAAACCCAAAGACAAGGACTACGTCCTCACCGA
TGGCGACGGCCTCCAGCTTCGAGTCCGGGTCAATCGCTCGATGCAGTGGAATTTCAACTACAGGCATCCGGTTACCAAGA
ATCGAATCAACATGGCGCTCGGCTCTTATCCAGAGGTTTCTCTGGCGCAAGCTCGCAGAAAAGCGGTTGAAGCCAGAGAA
ATACTCGCGCAGGGCATAGACCCCAAAGCTCAGCGCAACGAGCTTGCGCAGGCCAAGCGGGTCGAGACGGAACTTACGTT
TGAGAAAGTGGCTACCGCTTGGTTCGAGCTGAAGAAGGATTCGGTCACGCCAGCCTACGCCGAGGACATCTGGCGCTCAC
TCACGCTACACGTATTTCCGAACATGAAATCGACACCAATCTCTGAAGTCAGCGCACCGATGGTGATCAAACTCCTTCGC
CCTATTGAAGCGAAAGGTAGCCTGGAAACCGTGAAACGACTTTGCCAGCGGCTCAACGAGATCATGACCTATGGAGTCAA
TTCGGGAATGATTTTCGCGAACCCCCTCAGCGGAATTCGGGCTGTATTCAAGAAACCGAAGAAAGAGAACATGGCCGCGC
TACCACCAGAGGAACTTCCTGAGCTCATGCTGGAAATCGCGAACGCTAGCATCAAGCGCACAACCCGCTGCCTGATCGAA
TGGCAGTTGCACACCATGACTCGGCCTGCCGAGGCGGCAACCACTCGCTGGGCAGATATCGACTTCGAAAGGCGTGTCTG
GACTATCCCACCAGAGCGGATGAAAAAGCGCCGCCCACACAGCATCCCTTTGAGCAATCAAACAATGGCATTGCTCGAGG
TTCTCAGGTCCCATAGTGGTCATCGGGAATATGTTTTTCCGGCTGACCGAAACCCACGTACTCACGCCAATAGCCAGACC
GCAAACATGGCATTGAAACGCATGGGCTTCCAGGACCGCTTGGTCAGTCACGGTATGCGCTCGATGGCCAGCACCATCTT
AAATGAACACGGGTGGGACCCGGAACTCATTGAGGTCGCGCTGGCGCACGTCGACAAGGATGAGGTGCGGAGCGCCTACA
ACCGAGCCGACTACATCGAGCGCCGACGGCCGATGATGGCTTGGTGGAGCGAATACATTCAAAGGGCGTCGGCGGGTAAT
CTCTCGGCCAGCGCGATCAATGTGATCAGGGACCGGAACGTAGTATCGATCCGTTAG

Protein sequence : 
MCAQTARLSDRQLKAVKPKDKDYVLTDGDGLQLRVRVNRSMQWNFNYRHPVTKNRINMALGSYPEVSLAQARRKAVEARE
ILAQGIDPKAQRNELAQAKRVETELTFEKVATAWFELKKDSVTPAYAEDIWRSLTLHVFPNMKSTPISEVSAPMVIKLLR
PIEAKGSLETVKRLCQRLNEIMTYGVNSGMIFANPLSGIRAVFKKPKKENMAALPPEELPELMLEIANASIKRTTRCLIE
WQLHTMTRPAEAATTRWADIDFERRVWTIPPERMKKRRPHSIPLSNQTMALLEVLRSHSGHREYVFPADRNPRTHANSQT
ANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVALAHVDKDEVRSAYNRADYIERRRPMMAWWSEYIQRASAGN
LSASAINVIRDRNVVSIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAA82714.1 integrase Not tested VPI Protein 6e-125 61
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 9e-125 61
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 9e-125 61
int AAK20773.1 integrase Not tested VPI Protein 6e-125 61
int AAK20803.1 integrase Not tested VPI Protein 6e-125 61
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 3e-107 52
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-96 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-96 50
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-96 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_00675 YP_007027687.1 phage integrase VFG1092 Protein 5e-97 50