Gene Information

Name : pilR (PputUW4_04656)
Accession : YP_007031653.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : two-component response regulator PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5340156 - 5341493 bp
Length : 1338 bp
Strand : +
Note : [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
TTGAACACGAGACCACGACAAAAAGTCTTGATCGTCGATGACGAACCAGACATACGCGAACTCCTGGAAATCACCCTGGG
AAGGATGAAACTGGAGACGTTCAACGCCCGCAATGTCGGCGAAGCGCAATCGCTGCTAAAAAGCGAAACATTCGATCTCT
GCCTGACCGACATGCAATTGCCGGATGGCACCGGCCTGGAATTGGTGCAGCACATCCAGCAACGTCACCCTCAGGTCCAG
GTGGCGATGATCACTGCCTATGCCAGTCTCGAAACCGCTATCAATGTGCTCAAGGCCGGTGCATTCGACTTCCTGACGAA
ACCGGTGGACCTTACGCGCCTGCGTGAACTGGTCACCAGCGCGCTGCTGCTTCCTGCCAGCGGGGTCGACATCGATCGCC
GTTTGCTGGGCGACTCATTGCCCATGCGCAACCTGCGCAAACACATCACCAAACTGGCCAACAGTCACGCGACGGTATAC
ATCAGCGGAGAATCCGGCAGTGGCAAGGAATTGGTCGCGCGCCTGATCCATGATCAAAGCCCCCGCGCCAAGCAGCCGTT
CATTGCGATCAACTGCGCGGCGATTCCCTCGGAACTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCG
GCGCCATCGAAGATAAACCCGGTCTGTTCCAGACAGCTCACGGCGGCACCCTGCTCCTGGACGAAGTGGCTGACCTGCCG
CTGGCAATGCAGGTCAAACTGCTACGCGCCATTCAGGAGAAAGCCGTACGCAGCGTCGGTGGGCAGCAGGAAGTGGCAGT
GGATGTGCGCATTCTTTGCGCTACACACAAGGAACTTGGCGCCGAAGTCGCCGCCGGGCGATTTCGGCATGACCTTTACT
ATCGTTTGAATGTGATCGAACTCCGGGTGCCGCCCTTGCGCGAGCGTCGCGATGACATCGAGGTGCTGGCCAGCCACATA
CTCAAGCGCCTGGCCGCCGATACGGGTCAATCGGCAGCCAGACTCCACCCCCTAGCCCTCGATGCGCTGAAAAGCTATCG
CTTCCCGGGCAATGTGCGGGAACTGGAAAATATGCTCGAGCGGGCTCACACCTTGTGCGAGGACAATCAGATCGAAGCCG
GTGACCTGCGCCTGGCTGAAGGCAATTGCGCAGCTGAAGGTGGAATGCCGGACCTGTCCCGGATAGATAATCTGGACACC
TATCTGGAAAACGTCGAACGCCAACTGCTGCTCCAGGCCCTAGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCG
GTTGAATCTGTCATTCAGGTCGATGCGTTACAGGCTCAAGAAATTGGGACTGGATTGA

Protein sequence : 
MNTRPRQKVLIVDDEPDIRELLEITLGRMKLETFNARNVGEAQSLLKSETFDLCLTDMQLPDGTGLELVQHIQQRHPQVQ
VAMITAYASLETAINVLKAGAFDFLTKPVDLTRLRELVTSALLLPASGVDIDRRLLGDSLPMRNLRKHITKLANSHATVY
ISGESGSGKELVARLIHDQSPRAKQPFIAINCAAIPSELLESEFFGHRKGSFSGAIEDKPGLFQTAHGGTLLLDEVADLP
LAMQVKLLRAIQEKAVRSVGGQQEVAVDVRILCATHKELGAEVAAGRFRHDLYYRLNVIELRVPPLRERRDDIEVLASHI
LKRLAADTGQSAARLHPLALDALKSYRFPGNVRELENMLERAHTLCEDNQIEAGDLRLAEGNCAAEGGMPDLSRIDNLDT
YLENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-102 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-102 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_007031653.1 two-component response regulator PilR BAC0467 Protein 1e-72 43
pilR YP_007031653.1 two-component response regulator PilR BAC0089 Protein 6e-78 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_007031653.1 two-component response regulator PilR VFG1214 Protein 2e-167 76
pilR YP_007031653.1 two-component response regulator PilR VFG0116 Protein 4e-62 41