Gene Information

Name : PputUW4_04493 (PputUW4_04493)
Accession : YP_007031490.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5159006 - 5159683 bp
Length : 678 bp
Strand : +
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCGTCCTGATTATCGAAGACGAGGAAAAAACCGCGGACTATCTGCACCGCGGCCTGACGGAACAGGGTTACACCGT
GGACCTGGCGCAGGATGGGGTCGAAGGCCTGCATCTGGCGCTGGAGAGCGACTACGCGGTGATCGTCCTGGACGTGATGT
TGCCGGGCCTCGACGGTTTCGGCGTATTGCGCGCCTTGCGTGCGCGCAAGCAGACCCCGGTGATCATGCTCACCGCCCGC
GAACGTGTGGAAGATCGCATCAGGGGCCTGCGTGACGGCGCCGATGATTACCTGGGCAAACCGTTTTCCTTCCTTGAGCT
GGTGGCACGCCTGCAAGCGCTGACCCGGCGCAGCGGCGGTCATGAACCGGTGCAAGTGAGCATTGCCGACCTGTGGATAG
ATTTGATCAGCCGCAAGGCTACTCGCGGCGGCGCACGGCTGGACCTGACCGCCAAGGAGTTCTCGCTGCTCAGCGTATTG
GCGCGCCGCCAGGGTGAAATTCTCTCGAAAACCGCCATTGCCGAGATGGTCTGGGACATCAATTTCGACAGCGACGCCAA
CGTCGTCGAAGTCGCGATCAAACGCCTGCGGGCCAAGCTCGACGGGCCGTTCGAAGAGAAATTGCTGCACACCATTCGCG
GCATGGGTTATGTGCTGGAGAGCCGTGGTGTCCAGTAA

Protein sequence : 
MRVLIIEDEEKTADYLHRGLTEQGYTVDLAQDGVEGLHLALESDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIRGLRDGADDYLGKPFSFLELVARLQALTRRSGGHEPVQVSIADLWIDLISRKATRGGARLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEEKLLHTIRGMGYVLESRGVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-56 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-55 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0197 Protein 1e-59 58
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0125 Protein 8e-64 57
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0083 Protein 8e-58 56
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0638 Protein 9e-51 55
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0111 Protein 1e-58 53
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0308 Protein 2e-55 50
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator BAC0347 Protein 2e-52 50
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator AE015929.1.gene1106. Protein 4e-32 41
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator CP000675.2.gene1535. Protein 1e-33 41
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator VFG0596 Protein 2e-56 56
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator VFG1389 Protein 5e-38 46
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator VFG1386 Protein 2e-35 44
PputUW4_04493 YP_007031490.1 DNA-binding heavy metal response regulator VFG1390 Protein 1e-40 42