Gene Information

Name : PputUW4_04343 (PputUW4_04343)
Accession : YP_007031340.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4989430 - 4990755 bp
Length : 1326 bp
Strand : +
Note : [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
ATGCTGAACTCAGTGATGGTGGTGGACGACGAAAGCAGCATCCGCAGTGCCGTCGAGCAATGGTTGAGCCTGTCGGGTTT
CGAGGTGCAGCTGTTCAGCCGCGCCGACGAGTGTCTGGCGCAGCTACCGAAGCATTTTGCCGGGGTGATTCTCAGCGATG
TGCGCATGCCCGGCATGACCGGCCTGGAACTGTTGGCCGAGGTGCAACGCCGGGATGCCGATTTGCCGGTGATCCTGTTG
ACCGGCCACGGCGACGTACCGATGGCCGTCGAGGCCATGCGCGACGGCGCCTACGATTTCCTCGAAAAGCCCTTCAGCCC
GGAAACCCTGCTCGGCAGCCTGCGCCGCGCCCTCGACAAGCGCCGGCTGGTGCTGGAAAACCGCGCACTGCACGAGCAGG
CGGACAACCGCGCCAAACTCGATGCCACGCTGCTCGGCGTGTCCCGTGGCTTGCAGACCCTGCGCCGGCAGGTGCTGGAC
CTGGCAGCCCTGCCGGTCAACGTGCTGATTCGCGGGGAAACCGGTAGCGGCAAGGAGCTGGTCGCACGCTGCCTGCATGA
CTTCGGGTCGCGAGCCGACAAGCCCTTTGTCGCACTCAATTGCGCGGCCATCCCCGAGCAACTGTTCGAGGCCGAACTGT
TCGGTCACGAGAGCGGTGCGTTCACCGGGGCGTCCGGCAAGCGCATCGGCAAACTCGAATACGCCGACGGTGGCACGCTG
TTTCTCGATGAAATCGAAAGCATGCCGCTGGCCCAGCAGGTGAAATTGCTGCGGGTGCTGCAAGAGCAGAAGCTTGAGCG
ACTGGGTTCGAACCAGAGCATTCGCGTGGATTTGCGCATCATTGCCGCGACCAAACCGGACCTGCTCGACGAAGCGCGGG
CCGGACGTTTTCGCGAAGACCTGGCCTATCGCTTGAACGTCGCTGAACTGCGCCTACCGCCCTTGCGCGAACGCCGTGAA
GACATCCCGCTGCTGTTCGAATCCTTTGCCCAAAACGCCGCCGAACGGCTGGGGCGTAAATTTCCACCGTTGAGCGGTGC
GCAGTTGAGTCACCTGCTGAGCCACGACTGGCCGGGCAATGTGCGCGAACTGGCGAATGTCGCCGAACGCCAGGTACTGG
GGCTCGGTGAGCCGGAGCCATTGGGCATCGAGCCCGGCCAGTCACTGGCGGCGCAGCAGGAAGCGTTCGAAGCGCAATGC
CTGCGCGCCGCGTTGACCCGGCACAAGGGTGACGTCAAGGCGGTGCTTGAAGAACTGCAACTGCCGCGGCGGACCTTCAA
TGAAAAGATGCAGCGGCATGGGTTGAGCAGAGAGATGTTCCTGTAG

Protein sequence : 
MLNSVMVVDDESSIRSAVEQWLSLSGFEVQLFSRADECLAQLPKHFAGVILSDVRMPGMTGLELLAEVQRRDADLPVILL
TGHGDVPMAVEAMRDGAYDFLEKPFSPETLLGSLRRALDKRRLVLENRALHEQADNRAKLDATLLGVSRGLQTLRRQVLD
LAALPVNVLIRGETGSGKELVARCLHDFGSRADKPFVALNCAAIPEQLFEAELFGHESGAFTGASGKRIGKLEYADGGTL
FLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIRVDLRIIAATKPDLLDEARAGRFREDLAYRLNVAELRLPPLRERRE
DIPLLFESFAQNAAERLGRKFPPLSGAQLSHLLSHDWPGNVRELANVAERQVLGLGEPEPLGIEPGQSLAAQQEAFEAQC
LRAALTRHKGDVKAVLEELQLPRRTFNEKMQRHGLSREMFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR ABQ88368.1 HrpR Virulence Hrp PAI Protein 5e-44 43
hrpR AAA17651.1 positive regulatory factor Not tested Hrp PAI Protein 5e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_04343 YP_007031340.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 3e-59 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_04343 YP_007031340.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 4e-51 44
PputUW4_04343 YP_007031340.1 sigma-54 dependent DNA-binding response regulator VFG1249 Protein 2e-57 43
PputUW4_04343 YP_007031340.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 3e-44 41