Gene Information

Name : sicA (PputUW4_03624)
Accession : YP_007030621.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : chaperone protein SicA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4211570 - 4212061 bp
Length : 492 bp
Strand : -
Note : [R] COG0457 FOG: TPR repeat

DNA sequence : 
ATGAGTCGCGACAAACAACAAGATGAACAACTGGCCCTCGATGTCGTGGATGCGGTGCTCGGTGGTGCGGCATTGAAAGA
CGTGCAAGGCATCAGTGACGAACACATGAACGGTCTCTATGCCTTCGCGTTCCAGTTTTATGAGCAGGGGCGGCTGGACG
ATGCCGAAAAGTTCTTCCATTTCCTGTGCATCTACGACCTCAACAACAGCCATTACTGGATGGGGTTGGCCGCCGTACAC
CAACTCAAGCAGAACCACCAGAAAGCGATCGACCTGTATGCGATTGCCTTCGCCCAAGGCAAGAACGACTACCGACCGAT
GCTGTACACCGGCCAATGTCACCTGGCGCTGGGCAAGGTCGGCAAGGCCAGATTGTGCTTCGAATATGTGCTTGAGCAAG
CCACGGAAGACGATTTGCGCAAACAGGCTCAGGTGTATCTCGACACCTTGAGTCACATGGAAAAAGATTGTTCGGAGACT
GAACATGAGTGA

Protein sequence : 
MSRDKQQDEQLALDVVDAVLGGAALKDVQGISDEHMNGLYAFAFQFYEQGRLDDAEKFFHFLCIYDLNNSHYWMGLAAVH
QLKQNHQKAIDLYAIAFAQGKNDYRPMLYTGQCHLALGKVGKARLCFEYVLEQATEDDLRKQAQVYLDTLSHMEKDCSET
EHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 6e-37 55
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 6e-37 55
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 6e-37 55
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 6e-37 55
sycB AAS66850.1 SycB Not tested SSR-1 Protein 3e-31 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sicA YP_007030621.1 chaperone protein SicA VFG0547 Protein 2e-37 55
sicA YP_007030621.1 chaperone protein SicA VFG2451 Protein 1e-37 50
sicA YP_007030621.1 chaperone protein SicA VFG0988 Protein 6e-37 48
sicA YP_007030621.1 chaperone protein SicA VFG1769 Protein 1e-32 44