Gene Information

Name : cinR (PputUW4_03500)
Accession : YP_007030498.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4063531 - 4064211 bp
Length : 681 bp
Strand : +
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAACTGCTGATTGTCGAAGACCAACCGAAGACCGGCCACTACCTGCGTCAGGGTCTGGCCGAGGCCGGGTTCAACAC
GGAACTGGTGGCCGACGGCAGCACCGGCCAGCAACTGGCTCTCAGCGGCGAGTATGCCCTGCTGATTCTCGATGTGATGC
TGCCCGGCCGCGATGGCTGGCAGATTCTGCAAGCGGTACGCGGCGCCGGCCTGGACACGCCGGTACTTTTTCTGACAGCG
CGCGACGCCGTGGAAGACAGGGTCCACGGCCTCGAACTGGGCGCCGATGACTATCTGGTCAAGCCGTTTGCGTTCTCCGA
ACTGCTGGCCCGGGTCCGCAGCCTGTTGCGTCGTGGTAGCGCCACGCCTCAGGAGACCAGCCTGCAACTGGCCGATTTGC
GCCTGGACCTGATCCGACGCCGGGTCGAACGCAGCGGCCAGCGGATCGACCTGACCGCCAAGGAGTTCGCCCTGCTGGAA
ATGCTCCTGCGCCGTCAGGGCGAAGTCCTGCCCAAGTCGCTGATTGCGTCCCAGGTCTGGGACATGAATTTCGACAGCGA
CACCAATGTCATCGAGGTGGCGATCCGCCGACTGCGCCTGAAGATCGACGATGAATTCCCCAACAAGCTGATCCACACCG
TGCGCGGCATGGGTTACGTGCTTGAAGAGCGCCCTGCCTGA

Protein sequence : 
MKLLIVEDQPKTGHYLRQGLAEAGFNTELVADGSTGQQLALSGEYALLILDVMLPGRDGWQILQAVRGAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGSATPQETSLQLADLRLDLIRRRVERSGQRIDLTAKEFALLE
MLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDEFPNKLIHTVRGMGYVLEERPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-52 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-51 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0638 Protein 6e-63 72
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0083 Protein 4e-68 71
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0197 Protein 6e-62 67
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0111 Protein 4e-64 65
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0308 Protein 1e-62 62
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0347 Protein 1e-56 59
cinR YP_007030498.1 two component heavy metal response transcriptional regulator BAC0125 Protein 5e-59 58
cinR YP_007030498.1 two component heavy metal response transcriptional regulator NC_002516.2.879194.p Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cinR YP_007030498.1 two component heavy metal response transcriptional regulator VFG0596 Protein 7e-53 56
cinR YP_007030498.1 two component heavy metal response transcriptional regulator VFG1390 Protein 7e-37 45
cinR YP_007030498.1 two component heavy metal response transcriptional regulator VFG1389 Protein 3e-29 41