Gene Information

Name : cbrD (PputUW4_03428)
Accession : YP_007030426.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : achromobactin transport ATP-binding protein CbrD
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.34
Position : 3985088 - 3985879 bp
Length : 792 bp
Strand : -
Note : [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

DNA sequence : 
ATGACGTCGATTGCAAGTCGCGGCCTGACCCTGAGTTACCAGCGCCAGGTCATTATTGACGCGCTGGACATGCAACTGCC
CCAAGGCAAGATTTCGGTGCTGATCGGCAGCAACGGCTGCGGCAAAAGCACCTTGCTCAAATCCTTCGCCCGACTGCTCA
AACCGCAGCAGGGCTCGGTGATTCTCAACGGTGTGGATATCCAGCAAAAGTCCACGGCCGCCGTGGCCAGGGAATTGGCC
ATTTTGCCTCAGACCCCCAGCGCGCCGGAGGGCATCACCGTGCGGCAGTTGGTGGCGTTGGGACGTTATCCGTATCAGAG
CTGGATGCAGCAGTGGTCGGCTGAAGATGAGGCCATGGTCAACCGCGCGCTGACGCAAACCAGCCTCCAGGCCCTGGCGG
ACCGACCGGTGGATGCGTTGTCCGGCGGGCAGCGCCAGCGCGCGTGGATCGCCATGACCCTGGCCCAGGACACCGGCATC
GTGCTGCTCGACGAACCCACCACGTTTCTCGACCTGGCGCACCAGATCGAAGTGCTGGACCTGCTGCGCGACCTCAACCG
GCTCGAAAACAAGACCATCATCATGGTGCTGCACGACCTCAACCTGGCCTGTCGTTACGCCGACCACATGGTTGCGGTGC
ACAACCGGACGGCCTTTGCCCAGGGGCGGCCCGACGAGGTGTTGACCGAACCCCTGGTCAAAACCGTATTCGACCTCAAT
TGCCGGATCATTGCCGATCCGTTCTTCGGCACGCCGTTGTGCATTCCGTTTGGCCGGGAATTGCCGCAATGA

Protein sequence : 
MTSIASRGLTLSYQRQVIIDALDMQLPQGKISVLIGSNGCGKSTLLKSFARLLKPQQGSVILNGVDIQQKSTAAVARELA
ILPQTPSAPEGITVRQLVALGRYPYQSWMQQWSAEDEAMVNRALTQTSLQALADRPVDALSGGQRQRAWIAMTLAQDTGI
VLLDEPTTFLDLAHQIEVLDLLRDLNRLENKTIIMVLHDLNLACRYADHMVAVHNRTAFAQGRPDEVLTEPLVKTVFDLN
CRIIADPFFGTPLCIPFGRELPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-50 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-55 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-55 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-53 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-52 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-52 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-52 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-52 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-46 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-47 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-47 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-47 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-47 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_007030426.1 achromobactin transport ATP-binding protein CbrD BAC0164 Protein 1e-50 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_007030426.1 achromobactin transport ATP-binding protein CbrD VFG0925 Protein 7e-58 50
cbrD YP_007030426.1 achromobactin transport ATP-binding protein CbrD VFG1042 Protein 1e-50 49