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Name : topB (PputUW4_03014) Accession : YP_007030014.1 Strain : Pseudomonas sp. UW4 Genome accession: NC_019670 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : 5.99.1.2 Position : 3541858 - 3543804 bp Length : 1947 bp Strand : + Note : [L] COG0550 Topoisomerase IA DNA sequence : ATGCGGCTGTACCTCTGTGAAAAACCTTCCCAGGCCAAAGACATTGCGGCAGTCCTCGGCGCCCGGCGCCGAGGCGATGG CTGTTGGCTGGGAACGGATGTCACGGTGACCTGGTGCATCGGCCACCTGCTGGAAACCGCGCCGCCGGATGCCTACGACG CGCGCTACAAGCGCTGGGTGCTGGCCGACCTGCCGATCATTCCCGAAAAGTGGAAAATGACCGTCAAGCCGCGCACCGCC AGCCAGTACAAGGCGGTCAAGCGCCTGCTCGGTGAAGCGGCCGAACTGGTCATTGCCACGGACGCCGACCGTGAGGGCGA GATGATCGCCCGGGAACTGGTGGAGCATTGCCGCTATCGCGGGCCGATCCGCCGCCTCTGGTTGTCGGCCCTGGATGATG CGTCCATCCGCAAGGCTCTCGCGGCACTCAAACCGGGCAACGAGACGTTCAGCCTCTATCACTCGGCCCTGGGGCGTTCC CGGGCCGACTGGCTGATCGGCATGAACATGAGCCGGCTGTTCACCTTGCTGGGGCGCCAGTCCGGCTATCAAGGCGTGCT GCCGGTGGGCCGGGTGCAAACGCCGACCTTGCGCCTGGTAGTGGATCGCGATCGCAGCATTGCCGACTTTGTGCCCGTCC CCTATTGGGCCATCGATGTGCAACTGCTGCACAACGGCACCGCATTCACGGCGCAATGGCGCGCGGCATCCGAGGTTTGC GACGATCAGGACCGTTGCCTGAATCAGGCGCTGGCCCAACAAGCAGCAGACGCCATGCGCGGCGCGGCCAGTGCGCGGGT GATCAAATTGCGCACCGAACGGATGCGCGAAGTGGCCCCGCTGCCGTTCGACCTGGGCACCCTGCAGGAGGTCTGCTCAA AGAAACTCGGCCTCGGCGCCCAGGAAACCCTCGACATTGCCCAGGCGCTTTACGAAACCTACAAGGTCATCACCTATCCG CGCAGCGATTGCGGCTACTTGCCCCTCAGCCAGCACAACGAGGCACCGGCCATTCTGGCGGCGCTGCGCCAGGCCGACCC GGCGTTGAACACCTTGCACGATCACCTTGATCCGCAACGGCGCTCACGGGCCTGGAACGATGCCAAGGTCAGCGCTCACC ACGGCATCATCCCCACCGCGGCGGCGAAGAACCTCGACAAGCTGGCGGGCAAGCAGCGCGCGGTCTACACACTGATCCGC GCGCGGTATCTGGCGCAGTTCCTGCCCAATCACGAATACGACCGCACCCAGGCCGACTTCGATTGCGCAGGCCAAGCCTT GCGCGCTGTCGGCAAGCAGATCATCGAGCAGGGCTGGAAACGCGCCCTGCCCGAGGCACTGGCTGCGACCAAGGGACGCG AAGCTCCAGCGCCACAGACACTGCCCAACCTGGCCGAAGGCATCGATTGCGCAGTGGCCGGCGTGCAACTCAAGGACCTC TGGACGCAACCGCCAAAGCCGTTCACCGAAGGCGATCTGATCAAGGCCATGAAGAACGTCGCCAAACTGGTGGAAGACCC GCTGCTCAAGCAAAAGCTCAAGGACACCACCGGCATCGGCACCGAAGCGACCCGTGCGTCGATCATCCAGGGCCTGCTCG ACCGTGGCTATCTGGTCAAGAACGGCAAGGCCCTGGCCGCCACGCCGGCTGCGTTCAGCCTGATCGACGCCGTGCCGCGG GCCATTGCCGACCCGGGCACCACGGCGATCTGGGAACAGGCCCTGGACATGGTGCAAAGCGGTGAAATGAGTCTTGAAGA GTTCGTCACCAAACAGGCGGCGTGGATGAGCAAGCAGGTCAGCCGTTGCGCCGGACTGAGCCTGACCATCAGCGGTCCGC CGCCTAACGGATCTGCCGCAGCCCCCTGGAAGAAAAAACGCAAGAGCGCCCCGCGCAAACCAGCGAGCGGCACCAAGCGC AGGGCAAAACCGGCAAGCAAGACTTAA Protein sequence : MRLYLCEKPSQAKDIAAVLGARRRGDGCWLGTDVTVTWCIGHLLETAPPDAYDARYKRWVLADLPIIPEKWKMTVKPRTA SQYKAVKRLLGEAAELVIATDADREGEMIARELVEHCRYRGPIRRLWLSALDDASIRKALAALKPGNETFSLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPYWAIDVQLLHNGTAFTAQWRAASEVC DDQDRCLNQALAQQAADAMRGAASARVIKLRTERMREVAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETYKVITYP RSDCGYLPLSQHNEAPAILAALRQADPALNTLHDHLDPQRRSRAWNDAKVSAHHGIIPTAAAKNLDKLAGKQRAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGQALRAVGKQIIEQGWKRALPEALAATKGREAPAPQTLPNLAEGIDCAVAGVQLKDL WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKNGKALAATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFVTKQAAWMSKQVSRCAGLSLTISGPPPNGSAAAPWKKKRKSAPRKPASGTKR RAKPASKT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 65 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 61 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-149 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-149 | 50 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-149 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-149 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 4e-144 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-113 | 42 |
